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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0314629 |
| Transcript ID | Lj0g3v0314629.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic-like [Vitis vinifera] gi|359473235|ref|XP_003631274.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 343 | 302 | 0 | – | |
| PANTHER | 42 | 343 | 302 | 0 | – | |
| ProSiteProfiles | 76 | 110 | 35 | 6.073 | ||
| ProSiteProfiles | 140 | 174 | 35 | 8.133 | ||
| Pfam | 143 | 172 | 30 | 0.25 | ||
| ProSiteProfiles | 175 | 205 | 31 | 5.853 | ||
| Pfam | 206 | 252 | 47 | 4.30E-09 | ||
| ProSiteProfiles | 206 | 240 | 35 | 11.235 | ||
| Gene3D | 206 | 259 | 54 | 2.00E-06 | ||
| TIGRFAM | 209 | 241 | 33 | 5.90E-07 | ||
| ProSiteProfiles | 241 | 275 | 35 | 6.917 | ||
| ProSiteProfiles | 308 | 342 | 35 | 8.473 | ||
| ProSiteProfiles | 343 | 377 | 35 | 5.141 | ||
| ProSiteProfiles | 379 | 409 | 31 | 6.555 | ||
| PANTHER | 380 | 691 | 312 | 0 | – | |
| PANTHER | 380 | 691 | 312 | 0 | – | |
| ProSiteProfiles | 410 | 444 | 35 | 9.251 | ||
| TIGRFAM | 413 | 446 | 34 | 0.0014 | ||
| Pfam | 413 | 442 | 30 | 0.017 | ||
| ProSiteProfiles | 482 | 512 | 31 | 6.96 | ||
| Gene3D | 485 | 556 | 72 | 2.00E-06 | ||
| Pfam | 488 | 507 | 20 | 0.56 | ||
| Pfam | 512 | 559 | 48 | 1.90E-09 | ||
| ProSiteProfiles | 513 | 547 | 35 | 11.52 | ||
| TIGRFAM | 515 | 549 | 35 | 1.00E-07 | ||
| ProSiteProfiles | 548 | 578 | 31 | 6.763 | ||
| Pfam | 580 | 608 | 29 | 5.80E-07 | ||
| ProSiteProfiles | 584 | 614 | 31 | 7.684 | ||
| Gene3D | 592 | 679 | 88 | 2.00E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0314629.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0314629.1, powered by CORGI.
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