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Lj0g3v0316529.1

Overview

Field Value
Gene ID Lj0g3v0316529
Transcript ID Lj0g3v0316529.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] gi|356569020|ref|XP_003552705.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11538
1 127 127 3.20E-83 –
PANTHER
PTHR11538:SF41
1 127 127 3.20E-83 –
Gene3D
G3DSA:3.30.930.10
1 84 84 5.30E-42 –
Pfam
PF01409
1 82 82 1.10E-24
IPR002319
ProSiteProfiles
PS50862
1 94 94 9.006
IPR006195
SUPERFAMILY
SSF55681
2 83 82 1.06E-23 –
SUPERFAMILY
SSF54991
91 126 36 1.18E-07
IPR005121
ProSiteProfiles
PS51447
96 127 32 9.645
IPR005121

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0043039
Biological process TRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0316529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0316529.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.