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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0322659 |
| Transcript ID | Lj0g3v0322659.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357482291|ref|XP_003611431.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 365 | 351 | 0 | – | |
| PANTHER | 15 | 365 | 351 | 0 | – | |
| ProSiteProfiles | 23 | 57 | 35 | 9.109 | ||
| Pfam | 26 | 48 | 23 | 1.30E-05 | ||
| Gene3D | 26 | 229 | 204 | 2.10E-08 | ||
| TIGRFAM | 27 | 48 | 22 | 0.0014 | ||
| SUPERFAMILY | 34 | 94 | 61 | 1.60E-06 | ||
| Pfam | 57 | 84 | 28 | 3.40E-06 | ||
| TIGRFAM | 57 | 84 | 28 | 2.20E-06 | ||
| ProSiteProfiles | 58 | 84 | 27 | 6.007 | ||
| ProSiteProfiles | 85 | 119 | 35 | 12.134 | ||
| Pfam | 85 | 130 | 46 | 5.80E-08 | ||
| TIGRFAM | 88 | 119 | 32 | 1.40E-07 | ||
| ProSiteProfiles | 155 | 185 | 31 | 7.925 | ||
| Pfam | 160 | 182 | 23 | 0.052 | ||
| SUPERFAMILY | 162 | 340 | 179 | 1.60E-06 | ||
| ProSiteProfiles | 186 | 220 | 35 | 11.915 | ||
| Pfam | 186 | 233 | 48 | 8.60E-09 | ||
| TIGRFAM | 188 | 222 | 35 | 1.90E-07 | ||
| ProSiteProfiles | 221 | 256 | 36 | 8.988 | ||
| TIGRFAM | 223 | 256 | 34 | 2.10E-04 | ||
| ProSiteProfiles | 257 | 287 | 31 | 5.733 | ||
| Pfam | 261 | 281 | 21 | 0.48 | ||
| Gene3D | 265 | 340 | 76 | 2.10E-08 | ||
| ProSiteProfiles | 324 | 358 | 35 | 5.546 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0322659.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0322659.1, powered by CORGI.
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