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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0327279 |
| Transcript ID | Lj0g3v0327279.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula] gi|357478467|ref|XP_003609519.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 44 | 102 | 59 | – | – | |
| MobiDBLite | 200 | 249 | 50 | – | – | |
| MobiDBLite | 277 | 337 | 61 | – | – | |
| Coils | 460 | 480 | 21 | – | – | |
| CDD | 470 | 527 | 58 | 2.56E-14 | ||
| Pfam | 470 | 527 | 58 | 5.50E-06 | ||
| Gene3D | 470 | 534 | 65 | 1.20E-07 | ||
| PANTHER | 521 | 800 | 280 | 6.20E-124 | – | |
| PANTHER | 521 | 800 | 280 | 6.20E-124 | – | |
| MobiDBLite | 561 | 617 | 57 | – | – | |
| SMART | 662 | 708 | 47 | 1.70E-16 | ||
| Pfam | 664 | 708 | 45 | 3.30E-15 | ||
| ProSiteProfiles | 664 | 710 | 47 | 15.28 | ||
| MobiDBLite | 705 | 752 | 48 | – | – | |
| SMART | 753 | 799 | 47 | 1.40E-13 | ||
| Pfam | 755 | 798 | 44 | 5.00E-15 | ||
| ProSiteProfiles | 755 | 800 | 46 | 14.374 | ||
| MobiDBLite | 770 | 800 | 31 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj0g3v0327279.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0327279.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.