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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0334709 |
| Transcript ID | Lj0g3v0334709.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356533824|ref|XP_003535458.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 342 | 342 | – | – | |
| PANTHER | 13 | 586 | 574 | 0 | – | |
| PANTHER | 13 | 586 | 574 | 0 | – | |
| ProSiteProfiles | 58 | 88 | 31 | 5.821 | ||
| ProSiteProfiles | 89 | 119 | 31 | 10.019 | ||
| TIGRFAM | 91 | 119 | 29 | 1.20E-06 | ||
| Pfam | 92 | 118 | 27 | 2.40E-06 | ||
| ProSiteProfiles | 163 | 197 | 35 | 10.556 | ||
| Gene3D | 164 | 218 | 55 | 1.20E-06 | ||
| Pfam | 166 | 195 | 30 | 5.90E-05 | ||
| TIGRFAM | 167 | 194 | 28 | 1.10E-04 | ||
| ProSiteProfiles | 234 | 269 | 36 | 8.177 | ||
| ProSiteProfiles | 274 | 304 | 31 | 7.618 | ||
| ProSiteProfiles | 305 | 340 | 36 | 10.227 | ||
| Pfam | 305 | 352 | 48 | 3.20E-07 | ||
| TIGRFAM | 307 | 341 | 35 | 3.10E-05 | ||
| Phobius | 343 | 361 | 19 | – | – | |
| Phobius | 362 | 630 | 269 | – | – | |
| ProSiteProfiles | 376 | 406 | 31 | 7.903 | ||
| Gene3D | 379 | 451 | 73 | 1.20E-06 | ||
| Pfam | 379 | 401 | 23 | 0.026 | ||
| Pfam | 408 | 455 | 48 | 7.80E-08 | ||
| ProSiteProfiles | 408 | 442 | 35 | 12.09 | ||
| TIGRFAM | 410 | 443 | 34 | 1.80E-07 | ||
| ProSiteProfiles | 443 | 478 | 36 | 7.903 | ||
| ProSiteProfiles | 479 | 509 | 31 | 6.489 | ||
| Gene3D | 487 | 558 | 72 | 1.20E-06 | ||
| ProSiteProfiles | 545 | 579 | 35 | 7.706 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0334709.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0334709.1, powered by CORGI.
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