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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0339859 |
| Transcript ID | Lj0g3v0339859.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein [Theobroma cacao] gi|508716385|gb|EOY08282.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 26 | 513 | 488 | 0 | – | |
| PANTHER | 26 | 513 | 488 | 0 | – | |
| ProSiteProfiles | 27 | 61 | 35 | 8.879 | ||
| SUPERFAMILY | 28 | 64 | 37 | 3.80E-05 | ||
| Gene3D | 29 | 58 | 30 | 1.70E-09 | ||
| Pfam | 30 | 58 | 29 | 0.17 | ||
| TIGRFAM | 38 | 63 | 26 | 0.0012 | ||
| ProSiteProfiles | 62 | 96 | 35 | 6.27 | ||
| ProSiteProfiles | 97 | 123 | 27 | 5.031 | ||
| Pfam | 100 | 123 | 24 | 1.1 | ||
| ProSiteProfiles | 127 | 161 | 35 | 9.405 | ||
| TIGRFAM | 129 | 158 | 30 | 6.30E-07 | ||
| Pfam | 129 | 157 | 29 | 7.20E-07 | ||
| Gene3D | 201 | 251 | 51 | 1.70E-09 | ||
| ProSiteProfiles | 203 | 233 | 31 | 8.868 | ||
| Pfam | 207 | 233 | 27 | 8.30E-04 | ||
| TIGRFAM | 208 | 234 | 27 | 4.40E-04 | ||
| SUPERFAMILY | 215 | 258 | 44 | 3.73E-05 | ||
| Pfam | 234 | 281 | 48 | 8.80E-09 | ||
| ProSiteProfiles | 234 | 268 | 35 | 11.751 | ||
| TIGRFAM | 236 | 269 | 34 | 3.80E-07 | ||
| ProSiteProfiles | 269 | 303 | 35 | 5.689 | ||
| ProSiteProfiles | 304 | 334 | 31 | 8.89 | ||
| Gene3D | 307 | 332 | 26 | 1.70E-09 | ||
| TIGRFAM | 309 | 336 | 28 | 4.90E-04 | ||
| Pfam | 334 | 382 | 49 | 5.10E-10 | ||
| ProSiteProfiles | 335 | 369 | 35 | 11.838 | ||
| TIGRFAM | 337 | 370 | 34 | 5.40E-07 | ||
| ProSiteProfiles | 370 | 400 | 31 | 8.429 | ||
| TIGRFAM | 374 | 405 | 32 | 1.00E-04 | ||
| ProSiteProfiles | 406 | 436 | 31 | 8.374 | ||
| Gene3D | 407 | 491 | 85 | 1.70E-09 | ||
| SUPERFAMILY | 408 | 513 | 106 | 3.80E-05 | ||
| Pfam | 409 | 435 | 27 | 3.00E-04 | ||
| TIGRFAM | 410 | 434 | 25 | 3.60E-04 | ||
| ProSiteProfiles | 438 | 468 | 31 | 5.218 | ||
| SUPERFAMILY | 453 | 489 | 37 | 3.73E-05 | ||
| ProSiteProfiles | 472 | 506 | 35 | 5.733 | ||
| Pfam | 508 | 628 | 121 | 6.60E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0339859.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0339859.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.