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Lj0g3v0354659.4

Overview

Field Value
Gene ID Lj0g3v0354659
Transcript ID Lj0g3v0354659.4
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51192
1 157 157 16.935
IPR014001
SMART
SM00487
4 173 170 0.0021
IPR014001
CDD
cd00046
14 139 126 7.89E-12 –
Gene3D
G3DSA:3.40.50.300
16 138 123 2.60E-32
IPR027417
Pfam
PF00270
16 141 126 6.00E-17
IPR011545
SUPERFAMILY
SSF52540
17 150 134 2.90E-26
IPR027417
SUPERFAMILY
SSF52540
160 373 214 3.72E-46
IPR027417
CDD
cd00079
168 355 188 3.45E-10 –
Gene3D
G3DSA:3.40.50.300
190 385 196 2.50E-25
IPR027417
ProSiteProfiles
PS51194
192 387 196 10.703
IPR001650
Pfam
PF00271
201 343 143 3.10E-07
IPR001650
SMART
SM00490
254 345 92 1.00E-12
IPR001650
SUPERFAMILY
SSF46785
373 478 106 5.17E-08
IPR011991
Pfam
PF02889
466 496 31 3.00E-07
IPR004179

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0354659.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0354659.4, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.