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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004179
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.021s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0163489.1
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3-like isoform X1 [Cicer arietinum] gi|502166158|ref|XP_004513807.1| chr0 77312206 77316820 +
2 domain predictions
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Lj0g3v0354659.1
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186796725 186819693 -
3 domain predictions
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Lj0g3v0354659.2
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186796725 186827230 -
3 domain predictions
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Lj0g3v0354659.3
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186802567 186827230 -
3 domain predictions
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Lj0g3v0354659.4
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186819578 186827230 -
2 domain predictions
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Lj3g3v0966400.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356556951|ref|XP_003546783.1| chr3 13122548 13130884 +
3 domain predictions
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Lj5g3v2241240.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356525813|ref|XP_003531516.1| chr5 32377272 32381067 +
3 domain predictions
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Lj6g3v1139660.1
n.a. PREDICTED: translocation protein SEC63 homolog [Glycine max] gi|356530479|ref|XP_003533808.1| chr6 14033804 14040891 -
3 domain predictions
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LotjaGi1g1v0188900.1
n.a. ATP-dependent RNA helicase; TAIR: AT5G61140.2 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14; TrEMBL-Plants: tr|K7KW51|K7KW51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0188900 LjG1.1_chr1 37051485 37100406 +
3 domain predictions
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LotjaGi1g1v0188900.2
n.a. ATP-dependent RNA helicase; TAIR: AT5G61140.2 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14; TrEMBL-Plants: tr|A0A0B2Q999|A0A0B2Q999_GLYSO Activating signal cointegrator 1 complex subunit 3; Found in the gene: LotjaGi1g1v0188900 LjG1.1_chr1 37051695 37095471 +
3 domain predictions
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LotjaGi3g1v0141500.1
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748763 18757429 +
3 domain predictions
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LotjaGi3g1v0141500.2
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748967 18755959 +
3 domain predictions
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LotjaGi3g1v0141500.3
n.a. ATP-dependent helicase hrq1; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748967 18756137 +
3 domain predictions
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LotjaGi3g1v0141500.4
n.a. ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748997 18755959 +
3 domain predictions
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LotjaGi3g1v0141500.5
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18754139 18755959 +
3 domain predictions
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LotjaGi5g1v0347000_LC.2
n.a. ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0B2R3L5|A0A0B2R3L5_GLYSO U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi5g1v0347000_LC LjG1.1_chr5 66329406 66333393 +
3 domain predictions
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LotjaGi6g1v0220000.1
n.a. Chaperone protein dnaJ; TAIR: AT1G79940.1 DnaJ / Sec63 Brl domains-containing protein; Swiss-Prot: sp|Q0WT48|DNJ21_ARATH DnaJ protein ERDJ2A; TrEMBL-Plants: tr|A0A151R9V4|A0A151R9V4_CAJCA Translocation protein SEC63 isogeny; Found in the gene: LotjaGi6g1v0220000 LjG1.1_chr6 52325391 52333841 -
3 domain predictions
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LotjaGi6g1v0220000.2
n.a. Chaperone protein dnaJ; TAIR: AT1G79940.1 DnaJ / Sec63 Brl domains-containing protein; Swiss-Prot: sp|Q0WT48|DNJ21_ARATH DnaJ protein ERDJ2A; TrEMBL-Plants: tr|A0A151R9V4|A0A151R9V4_CAJCA Translocation protein SEC63 isogeny; Found in the gene: LotjaGi6g1v0220000 LjG1.1_chr6 52326482 52333840 -
3 domain predictions
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LotjaGi6g1v0220000.3
n.a. Chaperone protein dnaJ; TAIR: AT1G79940.1 DnaJ / Sec63 Brl domains-containing protein; Swiss-Prot: sp|Q0WT48|DNJ21_ARATH DnaJ protein ERDJ2A; TrEMBL-Plants: tr|A0A151R9V4|A0A151R9V4_CAJCA Translocation protein SEC63 isogeny; Found in the gene: LotjaGi6g1v0220000 LjG1.1_chr6 52326906 52332994 -
3 domain predictions
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LotjaGi6g1v0220000.4
n.a. Chaperone protein dnaJ; TAIR: AT1G79940.1 DnaJ / Sec63 Brl domains-containing protein; Swiss-Prot: sp|Q0WT48|DNJ21_ARATH DnaJ protein ERDJ2A; TrEMBL-Plants: tr|A0A151R9V4|A0A151R9V4_CAJCA Translocation protein SEC63 isogeny; Found in the gene: LotjaGi6g1v0220000 LjG1.1_chr6 52326906 52332994 -
3 domain predictions
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LotjaGi6g1v0220000.5
n.a. Chaperone protein dnaJ; TAIR: AT1G79940.1 DnaJ / Sec63 Brl domains-containing protein; Swiss-Prot: sp|Q0WT48|DNJ21_ARATH DnaJ protein ERDJ2A; TrEMBL-Plants: tr|A0A151R9V4|A0A151R9V4_CAJCA Translocation protein SEC63 isogeny; Found in the gene: LotjaGi6g1v0220000 LjG1.1_chr6 52326906 52333231 -
3 domain predictions
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