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Lj0g3v0360389.1

Overview

Field Value
Gene ID Lj0g3v0360389
Transcript ID Lj0g3v0360389.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356520461|ref|XP_003528880.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 39 39 – –
MobiDBLite
mobidb-lite
72 131 60 – –
PANTHER
PTHR24326
87 200 114 4.60E-147 –
PANTHER
PTHR24326:SF303
87 200 114 4.60E-147 –
SUPERFAMILY
SSF46689
104 180 77 5.13E-21
IPR009057
Gene3D
G3DSA:1.10.10.60
109 181 73 6.70E-23
IPR009057
ProSiteProfiles
PS50071
121 181 61 17.297
IPR001356
SMART
SM00389
122 185 64 9.80E-17
IPR001356
CDD
cd00086
124 181 58 1.27E-17 –
Pfam
PF00046
124 179 56 1.30E-18
IPR001356
ProSitePatterns
PS00027
156 179 24 –
IPR017970
Coils
Coil
175 195 21 – –
PANTHER
PTHR24326:SF303
229 242 14 4.60E-147 –
PANTHER
PTHR24326
229 242 14 4.60E-147 –
ProSiteProfiles
PS50848
312 548 237 42.662
IPR002913
SUPERFAMILY
SSF55961
314 545 232 5.91E-31 –
CDD
cd08875
316 544 229 5.66E-124 –
Pfam
PF01852
321 545 225 3.00E-53
IPR002913
SMART
SM00234
321 545 225 2.10E-43
IPR002913
PANTHER
PTHR24326:SF303
521 618 98 4.60E-147 –
PANTHER
PTHR24326
521 618 98 4.60E-147 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj0g3v0360389.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0360389.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.