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Field | Value |
---|---|
Gene ID | Lj0g3v0360399 |
Transcript ID | Lj0g3v0360399.2 |
Related isoforms 1 | |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: protein PHYLLO, chloroplastic-like [Glycine max] gi|356555334|ref|XP_003545988.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 25 | 484 | 460 | 4.90E-268 | – | |
PANTHER | 25 | 484 | 460 | 4.90E-268 | – | |
PIRSF | 38 | 527 | 490 | 6.20E-115 | ||
SUPERFAMILY | 41 | 221 | 181 | 8.57E-37 | ||
Gene3D | 46 | 219 | 174 | 2.70E-49 | ||
TIGRFAM | 47 | 519 | 473 | 3.80E-121 | ||
Pfam | 48 | 215 | 168 | 1.80E-30 | ||
CDD | 49 | 210 | 162 | 7.29E-84 | – | |
SUPERFAMILY | 203 | 213 | 11 | 2.97E-08 | ||
Pfam | 226 | 459 | 234 | 2.20E-21 | ||
SUPERFAMILY | 253 | 414 | 162 | 2.97E-08 | ||
PANTHER | 501 | 521 | 21 | 4.90E-268 | – | |
PANTHER | 501 | 521 | 21 | 4.90E-268 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Menaquinone biosynthetic process | The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2. | ||
Molecular function | Thiamine pyrophosphate binding | Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. | ||
Molecular function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity | Catalysis of the reaction: 2-oxoglutarate + H(+) + isochorismate = 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate + CO(2). |
Expression pattern of Lj0g3v0360399.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0360399.2, powered by CORGI.
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