Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v0013390.1

Overview

Field Value
Gene ID Lj1g3v0013390
Transcript ID Lj1g3v0013390.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 28 28 – –
PANTHER
PTHR10799
4 16 13 4.10E-164 –
PANTHER
PTHR10799
120 699 580 4.10E-164 –
SUPERFAMILY
SSF52540
152 404 253 3.22E-57
IPR027417
SMART
SM00487
159 362 204 1.10E-31
IPR014001
Gene3D
G3DSA:3.40.50.300
163 351 189 2.10E-23
IPR027417
ProSiteProfiles
PS51192
181 354 174 21.16
IPR014001
Pfam
PF00176
182 472 291 1.30E-52
IPR000330
CDD
cd00046
188 336 149 2.77E-19 –
SUPERFAMILY
SSF52540
408 709 302 8.12E-69
IPR027417
Gene3D
G3DSA:3.40.50.300
512 656 145 1.20E-17
IPR027417
CDD
cd00079
512 640 129 3.85E-22 –
ProSiteProfiles
PS51194
521 679 159 16.096
IPR001650
Pfam
PF00271
522 631 110 2.10E-14
IPR001650
SMART
SM00490
548 632 85 1.80E-18
IPR001650
SUPERFAMILY
SSF52540
746 792 47 8.12E-69
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 44

Expression data

Expression pattern

Expression pattern of Lj1g3v0013390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0013390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.