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Lj1g3v0052100.1

Overview

Field	Value
Gene ID	Lj1g3v0052100
Transcript ID	Lj1g3v0052100.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: DNA polymerase kappa-like [Cicer arietinum] gi\|502158892\|ref\|XP_004511315.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	32	32	–	–
PANTHER	PTHR11076:SF33 View details on PTHR11076:SF33 Search for proteins/transripts with this domain View external data on PTHR11076:SF33	28	250	223	9.10E-118	–
PANTHER	PTHR11076 View details on PTHR11076 Search for proteins/transripts with this domain View external data on PTHR11076	28	250	223	9.10E-118	–
SUPERFAMILY	SSF56672 View details on SSF56672 Search for proteins/transripts with this domain View external data on SSF56672	96	250	155	1.69E-54	–
ProSiteProfiles	PS50173 View details on PS50173 Search for proteins/transripts with this domain View external data on PS50173	122	250	129	37.579	IPR001126 Show description in modal box View details on IPR001126 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00817 View details on PF00817 Search for proteins/transripts with this domain View external data on PF00817	125	250	126	1.40E-36	IPR001126 Show description in modal box View details on IPR001126 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.70.270 View details on G3DSA:3.30.70.270 Search for proteins/transripts with this domain View external data on G3DSA:3.30.70.270	180	250	71	1.30E-14	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006281 View details of GO:0006281 AmiGO InterPro QuickGO	Biological process	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.	Subterm of View details of GO:0006259 View details of GO:0006974

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v0052100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0052100.1, powered by CORGI.

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