Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v0084850.1

Overview

Field Value
Gene ID Lj1g3v0084850
Transcript ID Lj1g3v0084850.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] gi|356528308|ref|XP_003532746.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
112 169 58 – –
MobiDBLite
mobidb-lite
195 216 22 – –
PANTHER
PTHR24015
221 446 226 2.40E-148 –
PANTHER
PTHR24015:SF583
221 446 226 2.40E-148 –
Pfam
PF01535
223 245 23 0.12
IPR002885
Gene3D
G3DSA:1.25.40.10
226 382 157 4.20E-07
IPR011990
ProSiteProfiles
PS51375
250 280 31 5.415
IPR002885
SUPERFAMILY
SSF48452
260 447 188 2.51E-06
IPR011990
ProSiteProfiles
PS51375
285 319 35 10.918
IPR002885
Pfam
PF01535
287 316 30 2.20E-04
IPR002885
TIGRFAM
TIGR00756
288 316 29 7.10E-06
IPR002885
Pfam
PF01535
319 347 29 0.017
IPR002885
ProSiteProfiles
PS51375
350 385 36 6.127
IPR002885
ProSiteProfiles
PS51375
386 416 31 6.073
IPR002885
Gene3D
G3DSA:1.25.40.10
416 451 36 4.20E-07
IPR011990
Pfam
PF14432
482 602 121 2.90E-40
IPR032867
PANTHER
PTHR24015:SF583
497 530 34 2.40E-148 –
PANTHER
PTHR24015
497 530 34 2.40E-148 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v0084850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0084850.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.