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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0116710 |
| Transcript ID | Lj1g3v0116710.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Glycine max] gi|356495778|ref|XP_003516750.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 210 | 210 | 0 | – | |
| PANTHER | 1 | 210 | 210 | 0 | – | |
| ProSiteProfiles | 9 | 39 | 31 | 5.514 | ||
| ProSiteProfiles | 43 | 73 | 31 | 7.958 | ||
| TIGRFAM | 48 | 75 | 28 | 4.80E-04 | ||
| Pfam | 74 | 121 | 48 | 3.70E-07 | ||
| ProSiteProfiles | 74 | 108 | 35 | 11.794 | ||
| TIGRFAM | 76 | 109 | 34 | 3.00E-06 | ||
| ProSiteProfiles | 109 | 143 | 35 | 6.095 | ||
| ProSiteProfiles | 144 | 174 | 31 | 5.185 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.55 | ||
| TIGRFAM | 177 | 211 | 35 | 0.0024 | ||
| Pfam | 177 | 207 | 31 | 0.068 | ||
| ProSiteProfiles | 210 | 244 | 35 | 7.026 | ||
| ProSiteProfiles | 245 | 275 | 31 | 5.985 | ||
| PANTHER | 246 | 550 | 305 | 0 | – | |
| PANTHER | 246 | 550 | 305 | 0 | – | |
| Gene3D | 253 | 396 | 144 | 7.20E-09 | ||
| SUPERFAMILY | 256 | 303 | 48 | 3.20E-05 | ||
| Pfam | 275 | 322 | 48 | 8.20E-09 | ||
| ProSiteProfiles | 276 | 310 | 35 | 12.025 | ||
| TIGRFAM | 278 | 311 | 34 | 1.40E-07 | ||
| ProSiteProfiles | 311 | 345 | 35 | 5.985 | ||
| Pfam | 351 | 370 | 20 | 1.2 | ||
| SUPERFAMILY | 371 | 542 | 172 | 3.20E-05 | ||
| Pfam | 376 | 423 | 48 | 4.30E-11 | ||
| ProSiteProfiles | 377 | 410 | 34 | 9.657 | ||
| TIGRFAM | 380 | 412 | 33 | 9.00E-04 | ||
| ProSiteProfiles | 411 | 446 | 36 | 8.144 | ||
| ProSiteProfiles | 447 | 477 | 31 | 8.353 | ||
| Pfam | 450 | 474 | 25 | 1.90E-05 | ||
| TIGRFAM | 451 | 475 | 25 | 1.60E-04 | ||
| Gene3D | 461 | 538 | 78 | 7.20E-09 | ||
| ProSiteProfiles | 513 | 547 | 35 | 8.901 | ||
| Pfam | 516 | 544 | 29 | 0.046 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0116710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0116710.1, powered by CORGI.
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