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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0117750 |
| Transcript ID | Lj1g3v0117750.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Glycine max] gi|356495778|ref|XP_003516750.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 292 | 284 | 0 | – | |
| PANTHER | 9 | 292 | 284 | 0 | – | |
| ProSiteProfiles | 56 | 90 | 35 | 5.097 | ||
| ProSiteProfiles | 91 | 121 | 31 | 5.514 | ||
| ProSiteProfiles | 125 | 155 | 31 | 7.881 | ||
| TIGRFAM | 128 | 157 | 30 | 3.80E-04 | ||
| Pfam | 130 | 156 | 27 | 0.11 | ||
| ProSiteProfiles | 156 | 190 | 35 | 11.794 | ||
| Pfam | 158 | 188 | 31 | 1.30E-04 | ||
| TIGRFAM | 158 | 191 | 34 | 4.40E-06 | ||
| Gene3D | 160 | 205 | 46 | 2.20E-09 | ||
| ProSiteProfiles | 191 | 225 | 35 | 6.095 | ||
| ProSiteProfiles | 226 | 256 | 31 | 5.185 | ||
| ProSiteProfiles | 257 | 291 | 35 | 8.55 | ||
| Pfam | 259 | 289 | 31 | 0.1 | ||
| ProSiteProfiles | 292 | 326 | 35 | 7.026 | ||
| ProSiteProfiles | 327 | 357 | 31 | 5.985 | ||
| PANTHER | 328 | 636 | 309 | 0 | – | |
| PANTHER | 328 | 636 | 309 | 0 | – | |
| Gene3D | 330 | 378 | 49 | 2.20E-09 | ||
| SUPERFAMILY | 338 | 385 | 48 | 6.32E-05 | ||
| Pfam | 357 | 404 | 48 | 1.20E-08 | ||
| ProSiteProfiles | 358 | 392 | 35 | 12.025 | ||
| TIGRFAM | 360 | 393 | 34 | 2.20E-07 | ||
| ProSiteProfiles | 393 | 427 | 35 | 5.985 | ||
| SUPERFAMILY | 453 | 624 | 172 | 6.32E-05 | ||
| Pfam | 458 | 505 | 48 | 6.60E-11 | ||
| ProSiteProfiles | 459 | 492 | 34 | 9.657 | ||
| TIGRFAM | 462 | 494 | 33 | 0.0013 | ||
| ProSiteProfiles | 493 | 528 | 36 | 8.144 | ||
| ProSiteProfiles | 529 | 559 | 31 | 8.353 | ||
| Pfam | 532 | 556 | 25 | 2.80E-05 | ||
| TIGRFAM | 533 | 556 | 24 | 2.30E-04 | ||
| Gene3D | 543 | 675 | 133 | 2.20E-09 | ||
| ProSiteProfiles | 595 | 629 | 35 | 8.901 | ||
| Pfam | 598 | 626 | 29 | 0.068 | ||
| Pfam | 632 | 754 | 123 | 6.60E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v0117750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0117750.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.