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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0411490 |
| Transcript ID | Lj1g3v0411490.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max] gi|356513598|ref|XP_003525499.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| Phobius | 7 | 28 | 22 | – | – | |
| TMHMM | 13 | 30 | 18 | – | – | |
| Phobius | 29 | 39 | 11 | – | – | |
| TMHMM | 40 | 59 | 20 | – | – | |
| Phobius | 40 | 60 | 21 | – | – | |
| Phobius | 61 | 80 | 20 | – | – | |
| Phobius | 81 | 104 | 24 | – | – | |
| TMHMM | 85 | 104 | 20 | – | – | |
| Phobius | 105 | 123 | 19 | – | – | |
| Phobius | 124 | 145 | 22 | – | – | |
| TMHMM | 124 | 146 | 23 | – | – | |
| Phobius | 146 | 297 | 152 | – | – | |
| PANTHER | 183 | 193 | 11 | 1.00E-19 | – | |
| PANTHER | 214 | 281 | 68 | 1.00E-19 | – | |
| SUPERFAMILY | 216 | 284 | 69 | 8.58E-20 | – | |
| Gene3D | 231 | 279 | 49 | 1.30E-15 | ||
| CDD | 234 | 279 | 46 | 1.74E-10 | – | |
| Pfam | 234 | 276 | 43 | 4.10E-13 | ||
| SMART | 235 | 275 | 41 | 7.00E-06 | ||
| ProSiteProfiles | 235 | 276 | 42 | 12.77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj1g3v0411490.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0411490.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.