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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0488980 |
| Transcript ID | Lj1g3v0488980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: isocitrate dehydrogenase [NADP] gi|502096593|ref|XP_004490788.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 412 | 412 | 0 | ||
| PIRSF | 1 | 412 | 412 | 6.10E-225 | ||
| SUPERFAMILY | 3 | 410 | 408 | 1.04E-151 | – | |
| TIGRFAM | 5 | 411 | 407 | 1.00E-244 | ||
| Gene3D | 5 | 410 | 406 | 4.90E-176 | ||
| Pfam | 7 | 402 | 396 | 1.80E-97 | ||
| SMART | 11 | 402 | 392 | 5.10E-126 | ||
| ProSitePatterns | 273 | 292 | 20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Isocitrate dehydrogenase (NADP+) activity | Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. | ||
| Biological process | Isocitrate metabolic process | The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj1g3v0488980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0488980.1, powered by CORGI.
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