Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0006102

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Isocitrate metabolic process
Full defintion The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle.
Subterm of

Relationships

The relationship of GO:0006102 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0006102, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0198506732

, · pages

Associated Lotus transcripts 11

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0102959.1
– PREDICTED: isocitrate dehydrogenase [NADP] gi|356513947|ref|XP_003525669.1|
GO terms
3
Lj1g3v0488980.1
– PREDICTED: isocitrate dehydrogenase [NADP] gi|502096593|ref|XP_004490788.1|
GO terms
3
Lj2g3v0948370.1
– PREDICTED: isocitrate dehydrogenase [NADP] gi|356513947|ref|XP_003525669.1|
GO terms
3
Lj3g3v0937820.1
– NADP-dependent isocitrate dehydrogenase [Glycine max] gi|351721946|ref|NP_001236203.1|
GO terms
3
LotjaGi1g1v0219400.1
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase; Swiss-Prot: sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0R0GQK7|A0A0R0GQK7_SOYBN Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi1g1v0219400
GO terms
3
LotjaGi1g1v0219400.2
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase; Swiss-Prot: sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|C6T857|C6T857_SOYBN Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi1g1v0219400
GO terms
3
LotjaGi1g1v0219400.3
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase; Swiss-Prot: sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|C6T857|C6T857_SOYBN Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi1g1v0219400
GO terms
3
LotjaGi3g1v0130600.1
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G54340.1 isocitrate dehydrogenase; Swiss-Prot: sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0B2QN79|A0A0B2QN79_GLYSO Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi3g1v0130600
GO terms
3
LotjaGi3g1v0130600.2
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G54340.1 isocitrate dehydrogenase; Swiss-Prot: sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0R0IMT3|A0A0R0IMT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0130600
GO terms
3
LotjaGi3g1v0130600.3
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G54340.1 isocitrate dehydrogenase; Swiss-Prot: sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0R0IMT3|A0A0R0IMT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0130600
GO terms
3
LotjaGi3g1v0130600.4
– Isocitrate dehydrogenase [NADP]; TAIR: AT1G54340.1 isocitrate dehydrogenase; Swiss-Prot: sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0B2QN79|A0A0B2QN79_GLYSO Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi3g1v0130600
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0055114
Biological process Oxidation-reduction process 1 9.09