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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0525420 |
| Transcript ID | Lj1g3v0525420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g61400-like [Cicer arietinum] gi|502128589|ref|XP_004500011.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 32 | 27 | 1.80E-205 | – | |
| PANTHER | 67 | 602 | 536 | 1.80E-205 | – | |
| ProSiteProfiles | 87 | 117 | 31 | 6.434 | ||
| Pfam | 91 | 113 | 23 | 0.34 | ||
| ProSiteProfiles | 119 | 153 | 35 | 10.084 | ||
| TIGRFAM | 122 | 155 | 34 | 8.40E-07 | ||
| Pfam | 123 | 151 | 29 | 0.07 | ||
| Pfam | 153 | 201 | 49 | 8.20E-15 | ||
| ProSiteProfiles | 154 | 188 | 35 | 13.461 | ||
| Gene3D | 155 | 206 | 52 | 1.10E-06 | ||
| TIGRFAM | 156 | 189 | 34 | 3.10E-12 | ||
| ProSiteProfiles | 189 | 223 | 35 | 11.181 | ||
| TIGRFAM | 191 | 223 | 33 | 1.70E-08 | ||
| ProSiteProfiles | 224 | 260 | 37 | 10.041 | ||
| Pfam | 256 | 288 | 33 | 2.00E-07 | ||
| ProSiteProfiles | 261 | 295 | 35 | 10.446 | ||
| TIGRFAM | 263 | 297 | 35 | 1.80E-06 | ||
| Gene3D | 264 | 399 | 136 | 1.10E-06 | ||
| Pfam | 295 | 344 | 50 | 3.20E-15 | ||
| ProSiteProfiles | 296 | 330 | 35 | 12.627 | ||
| TIGRFAM | 299 | 332 | 34 | 2.50E-09 | ||
| ProSiteProfiles | 331 | 365 | 35 | 12.233 | ||
| TIGRFAM | 333 | 366 | 34 | 2.00E-07 | ||
| Pfam | 366 | 414 | 49 | 1.80E-18 | ||
| ProSiteProfiles | 366 | 400 | 35 | 12.342 | ||
| TIGRFAM | 368 | 402 | 35 | 1.40E-09 | ||
| ProSiteProfiles | 401 | 435 | 35 | 12.671 | ||
| TIGRFAM | 403 | 437 | 35 | 7.40E-09 | ||
| Pfam | 435 | 484 | 50 | 2.70E-16 | ||
| ProSiteProfiles | 436 | 470 | 35 | 13.691 | ||
| TIGRFAM | 438 | 472 | 35 | 4.90E-10 | ||
| ProSiteProfiles | 471 | 505 | 35 | 7.607 | ||
| Pfam | 515 | 562 | 48 | 1.10E-09 | ||
| ProSiteProfiles | 516 | 550 | 35 | 11.466 | ||
| TIGRFAM | 518 | 551 | 34 | 1.20E-07 | ||
| ProSiteProfiles | 551 | 585 | 35 | 6.917 | ||
| ProSiteProfiles | 586 | 620 | 35 | 5.996 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0525420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0525420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.