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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0672670 |
| Transcript ID | Lj1g3v0672670.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cicer arietinum] gi|502087444|ref|XP_004488535.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 481 | 466 | 2.70E-295 | – | |
| PANTHER | 16 | 481 | 466 | 2.70E-295 | – | |
| ProSiteProfiles | 62 | 97 | 36 | 7.552 | ||
| ProSiteProfiles | 138 | 168 | 31 | 5.897 | ||
| Gene3D | 149 | 348 | 200 | 1.40E-05 | ||
| ProSiteProfiles | 169 | 199 | 31 | 11.531 | ||
| Pfam | 169 | 196 | 28 | 1.50E-07 | ||
| TIGRFAM | 171 | 199 | 29 | 8.70E-08 | ||
| ProSiteProfiles | 200 | 234 | 35 | 12.342 | ||
| Pfam | 200 | 247 | 48 | 7.10E-09 | ||
| TIGRFAM | 202 | 235 | 34 | 6.50E-08 | ||
| ProSiteProfiles | 235 | 269 | 35 | 5.13 | ||
| ProSiteProfiles | 270 | 300 | 31 | 6.971 | ||
| Pfam | 275 | 295 | 21 | 0.097 | ||
| Pfam | 301 | 347 | 47 | 8.60E-08 | ||
| ProSiteProfiles | 301 | 335 | 35 | 11.137 | ||
| TIGRFAM | 305 | 336 | 32 | 4.40E-05 | ||
| ProSiteProfiles | 336 | 371 | 36 | 7.509 | ||
| ProSiteProfiles | 372 | 402 | 31 | 6.599 | ||
| Pfam | 376 | 399 | 24 | 0.051 | ||
| Gene3D | 380 | 399 | 20 | 1.40E-05 | ||
| ProSiteProfiles | 406 | 440 | 35 | 7.596 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0672670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0672670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.