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Lj1g3v0725880.1

Overview

Field Value
Gene ID Lj1g3v0725880
Transcript ID Lj1g3v0725880.1
Lotus japonicus genome version MG20 v3.0
Description Lysine-specific demethylase 3B [Medicago truncatula] gi|357436481|ref|XP_003588516.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51667
2 49 48 13.524
IPR014977
MobiDBLite
mobidb-lite
44 69 26 – –
MobiDBLite
mobidb-lite
297 336 40 – –
SMART
SM00384
303 313 11 50
IPR017956
MobiDBLite
mobidb-lite
356 382 27 – –
SMART
SM00384
402 414 13 280
IPR017956
SMART
SM00384
432 444 13 140
IPR017956
MobiDBLite
mobidb-lite
456 475 20 – –
SMART
SM00384
464 476 13 3.2
IPR017956
SMART
SM00384
498 510 13 11
IPR017956
SMART
SM00384
532 544 13 22
IPR017956
MobiDBLite
mobidb-lite
620 712 93 – –
SMART
SM00384
673 685 13 85
IPR017956

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj1g3v0725880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0725880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.