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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00384
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 66 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.025s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062309.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 20888206 20904997 -
2 domain predictions
1 GO term
Lj0g3v0062319.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 20900418 20901766 -
2 domain predictions
1 GO term
Lj0g3v0093109.1
n.a. origin recognition complex subunit Orc4 [Schizosaccharomyces pombe 972h]-] gi|19112617|ref|NP_595825.1| chr0 38883609 38885196 -
2 domain predictions
1 GO term
Lj0g3v0093109.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1| chr0 38883609 38887246 -
2 domain predictions
1 GO term
Lj0g3v0100699.1
n.a. PHD finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297801176|ref|XP_002868472.1| chr0 42586261 42594667 -
2 domain predictions
1 GO term
Lj0g3v0217419.1
n.a. HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1| chr0 110690915 110692219 -
2 domain predictions
1 GO term
Lj0g3v0259499.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 134881318 134890456 +
2 domain predictions
1 GO term
Lj0g3v0259499.2
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 134881318 134890456 +
2 domain predictions
1 GO term
Lj0g3v0267409.1
n.a. HMGA2/WIF1 fusion protein [Homo sapiens] gi|125662765|gb|ABN50327.1| chr0 138550342 138551690 -
2 domain predictions
1 GO term
Lj0g3v0302789.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr0 157525301 157529536 +
2 domain predictions
1 GO term
Lj0g3v0319459.1
n.a. AT-hook protein [Medicago truncatula] gi|357476667|ref|XP_003608619.1| chr0 166772577 166776520 -
2 domain predictions
1 GO term
Lj0g3v0354859.1
n.a. TashAT2 [Theileria annulata] gi|289597673|gb|ADD12272.1| chr0 186906211 186907849 -
2 domain predictions
1 GO term
Lj1g3v0606380.1
n.a. related to DNA ligase (ATP) [Claviceps purpurea 20].1] gi|399166869|emb|CCE32226.1| chr1 7952233 7952617 +
2 domain predictions
1 GO term
Lj1g3v0725870.1
n.a. ENBP1 [Medicago truncatula] gi|3492803|emb|CAA05489.1| chr1 9605996 9635902 +
2 domain predictions
1 GO term
Lj1g3v0725880.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357436481|ref|XP_003588516.1| chr1 9606005 9608750 +
2 domain predictions
1 GO term
Lj1g3v2635090.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr1 30878635 30883387 -
2 domain predictions
1 GO term
Lj1g3v2635100.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr1 30878999 30883387 -
2 domain predictions
1 GO term
Lj1g3v3404290.1
n.a. AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1| chr1 39211773 39215090 -
2 domain predictions
1 GO term
Lj2g3v0677970.1
n.a. HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1| chr2 10862247 10864542 -
2 domain predictions
1 GO term
Lj2g3v1984960.1
n.a. AT-hook protein [Medicago truncatula] gi|357476667|ref|XP_003608619.1| chr2 29232473 29236250 -
2 domain predictions
1 GO term
Lj2g3v2560000.1
n.a. high mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1| chr2 35272421 35273630 -
2 domain predictions
1 GO term
Lj3g3v0718510.1
n.a. PttB [Medicago truncatula] gi|357486205|ref|XP_003613390.1| chr3 7886811 7890695 -
2 domain predictions
1 GO term
Lj3g3v1128980.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr3 15196922 15200189 +
2 domain predictions
1 GO term
Lj4g3v2644190.1
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
1 GO term
Lj4g3v2644190.2
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
1 GO term
Lj4g3v2951230.1
n.a. DNA-binding protein PD1 [Pisum sativum] gi|2213536|emb|CAA67290.1| chr4 39102707 39106087 -
2 domain predictions
1 GO term
Lj4g3v3114650.1
n.a. HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1| chr4 42047142 42049604 +
2 domain predictions
1 GO term
Lj5g3v1208330.1
n.a. DNA-binding protein [Medicago truncatula] gi|357504087|ref|XP_003622332.1| chr5 19736808 19743516 +
2 domain predictions
1 GO term
Lj6g3v0423840.1
n.a. HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1| chr6 3969164 3970540 -
2 domain predictions
1 GO term
LotjaGi1g1v0007100_LC.1
n.a. Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P79987|HIRA_CHICK Protein HIRA; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0007100_LC LjG1.1_chr1 1012673 1014044 -
2 domain predictions
1 GO term
LotjaGi1g1v0092300.1
n.a. HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300 LjG1.1_chr1 13568955 13570373 -
2 domain predictions
1 GO term
LotjaGi1g1v0224300.1
n.a. Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7M755|K7M755_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224300 LjG1.1_chr1 50808555 50839615 -
2 domain predictions
1 GO term
LotjaGi1g1v0569400.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400 LjG1.1_chr1 110231950 110235440 -
2 domain predictions
1 GO term
LotjaGi2g1v0198500.1
n.a. Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500 LjG1.1_chr2 63348952 63355051 -
2 domain predictions
1 GO term
LotjaGi2g1v0415000.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17950.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q940I0|AHL13_ARATH AT-hook motif nuclear-localized protein 13; TrEMBL-Plants: tr|A0A0L9UQM7|A0A0L9UQM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0415000 LjG1.1_chr2 91271404 91275311 -
2 domain predictions
1 GO term
LotjaGi3g1v0088400_LC.1
n.a. Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT1G62820.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|A0A072TE97|A0A072TE97_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0088400_LC LjG1.1_chr3 9972018 9976463 +
2 domain predictions
1 GO term
LotjaGi3g1v0123600_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123600_LC LjG1.1_chr3 15130671 15133335 +
2 domain predictions
1 GO term
LotjaGi3g1v0382100.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SYX0|A0A0S3SYX0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0382100 LjG1.1_chr3 77528932 77533742 -
2 domain predictions
1 GO term
LotjaGi3g1v0382200.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|V7AN95|V7AN95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0382200 LjG1.1_chr3 77571719 77576047 -
2 domain predictions
1 GO term
LotjaGi3g1v0481300.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481300 LjG1.1_chr3 89890802 89894631 -
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.1
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A0L9VAR9|A0A0L9VAR9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.2
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.3
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.4
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.5
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.6
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156706 10161025 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.7
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156779 10161339 +
2 domain predictions
1 GO term
LotjaGi4g1v0147700_LC.1
n.a. HMG-Y-related A; TAIR: AT5G27890.1 hypothetical protein; Swiss-Prot: sp|A6ZMG6|MYO5_YEAS7 Myosin-5; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0147700_LC LjG1.1_chr4 24037157 24039300 -
2 domain predictions
1 GO term
LotjaGi4g1v0188300.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17950.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q940I0|AHL13_ARATH AT-hook motif nuclear-localized protein 13; TrEMBL-Plants: tr|V7CEI0|V7CEI0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0188300 LjG1.1_chr4 42905825 42910076 +
2 domain predictions
1 GO term
LotjaGi4g1v0243300_LC.1
n.a. RNA-binding family protein, putative; TAIR: AT5G54900.1 RNA-binding protein 45A; Swiss-Prot: sp|Q1HE00|EIF3G_BOMMO Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|V7BYR1|V7BYR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0243300_LC LjG1.1_chr4 59322664 59325695 -
2 domain predictions
1 GO term