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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0986640 |
| Transcript ID | Lj1g3v0986640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356516077|ref|XP_003526723.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | – | – | |
| PANTHER | 1 | 11 | 11 | 4.30E-224 | – | |
| PANTHER | 1 | 11 | 11 | 4.30E-224 | – | |
| PANTHER | 27 | 182 | 156 | 4.30E-224 | – | |
| PANTHER | 27 | 182 | 156 | 4.30E-224 | – | |
| MobiDBLite | 48 | 68 | 21 | – | – | |
| Gene3D | 63 | 146 | 84 | 7.40E-17 | ||
| SUPERFAMILY | 64 | 148 | 85 | 1.26E-13 | ||
| SMART | 67 | 143 | 77 | 2.60E-08 | ||
| ProSiteProfiles | 68 | 138 | 71 | 14.634 | ||
| CDD | 70 | 139 | 70 | 5.18E-15 | – | |
| Pfam | 71 | 139 | 69 | 2.80E-12 | ||
| MobiDBLite | 146 | 171 | 26 | – | – | |
| SUPERFAMILY | 215 | 276 | 62 | 7.14E-08 | ||
| PANTHER | 216 | 452 | 237 | 4.30E-224 | – | |
| PANTHER | 216 | 452 | 237 | 4.30E-224 | – | |
| Gene3D | 219 | 289 | 71 | 1.70E-06 | ||
| SMART | 220 | 293 | 74 | 1.6 | ||
| ProSiteProfiles | 221 | 288 | 68 | 9.163 | ||
| SUPERFAMILY | 298 | 386 | 89 | 8.20E-09 | ||
| Gene3D | 303 | 378 | 76 | 3.50E-08 | ||
| SMART | 304 | 378 | 75 | 0.59 | ||
| Pfam | 307 | 372 | 66 | 2.20E-05 | ||
| MobiDBLite | 429 | 451 | 23 | – | – | |
| SMART | 465 | 535 | 71 | 5.10E-04 | ||
| Gene3D | 466 | 536 | 71 | 4.10E-11 | ||
| ProSiteProfiles | 466 | 530 | 65 | 12.139 | ||
| SUPERFAMILY | 467 | 538 | 72 | 1.61E-09 | ||
| CDD | 468 | 531 | 64 | 3.41E-08 | – | |
| Pfam | 468 | 531 | 64 | 1.80E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj1g3v0986640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0986640.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.