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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1092730 |
| Transcript ID | Lj1g3v1092730.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | SET and MYND domain-containing protein [Medicago truncatula] gi|357464329|ref|XP_003602446.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 56 | 440 | 385 | 0 | – | |
| PANTHER | 56 | 440 | 385 | 0 | – | |
| ProSiteProfiles | 63 | 173 | 111 | 11.248 | ||
| SMART | 63 | 96 | 34 | 0.51 | ||
| SUPERFAMILY | 63 | 173 | 111 | 8.47E-24 | ||
| Gene3D | 65 | 168 | 104 | 4.50E-26 | ||
| SMART | 106 | 139 | 34 | 0.014 | ||
| SMART | 140 | 173 | 34 | 25 | ||
| SUPERFAMILY | 207 | 266 | 60 | 3.66E-19 | – | |
| ProSiteProfiles | 213 | 514 | 302 | 12.022 | ||
| Gene3D | 218 | 251 | 34 | 2.40E-11 | – | |
| Pfam | 226 | 514 | 289 | 7.60E-09 | ||
| Gene3D | 443 | 539 | 97 | 2.40E-11 | – | |
| SUPERFAMILY | 455 | 544 | 90 | 3.66E-19 | – | |
| PANTHER | 461 | 598 | 138 | 0 | – | |
| PANTHER | 461 | 598 | 138 | 0 | – | |
| PANTHER | 652 | 776 | 125 | 0 | – | |
| PANTHER | 652 | 776 | 125 | 0 | – | |
| Gene3D | 673 | 705 | 33 | 4.50E-26 | ||
| SUPERFAMILY | 678 | 714 | 37 | 8.47E-24 | ||
| SMART | 678 | 711 | 34 | 20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1092730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1092730.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.