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Lj1g3v1147490.1

Overview

Field Value
Gene ID Lj1g3v1147490
Transcript ID Lj1g3v1147490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] gi|356516237|ref|XP_003526802.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11586:SF1
1 404 404 1.40E-190 –
PANTHER
PTHR11586
1 404 404 1.40E-190 –
ProSiteProfiles
PS50405
33 157 125 9.914
IPR010987
CDD
cd10304
51 148 98 3.16E-31 –
SUPERFAMILY
SSF47616
51 138 88 1.22E-18
IPR010987
Gene3D
G3DSA:1.20.1050.10
52 138 87 4.30E-05
IPR010987
Pfam
PF13410
69 131 63 2.80E-06 –
MobiDBLite
mobidb-lite
159 239 81 – –
CDD
cd02799
242 346 105 3.45E-51 –
SUPERFAMILY
SSF50249
242 395 154 8.08E-43
IPR012340
ProSiteProfiles
PS50886
243 346 104 29.807
IPR002547
Gene3D
G3DSA:2.40.50.140
244 400 157 3.70E-42 –
Pfam
PF01588
249 343 95 2.90E-24
IPR002547

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of

Genome browser

LORE1 insertions 114

Expression data

Expression pattern

Expression pattern of Lj1g3v1147490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1147490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.