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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1147560 |
| Transcript ID | Lj1g3v1147560.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat protein [Medicago truncatula] gi|357516795|ref|XP_003628686.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| Phobius | 16 | 22 | 7 | – | – | |
| PANTHER | 22 | 299 | 278 | 0 | – | |
| PANTHER | 22 | 299 | 278 | 0 | – | |
| Phobius | 23 | 707 | 685 | – | – | |
| ProSiteProfiles | 30 | 60 | 31 | 8.385 | ||
| Pfam | 33 | 59 | 27 | 0.02 | ||
| Pfam | 61 | 107 | 47 | 4.20E-10 | ||
| ProSiteProfiles | 61 | 95 | 35 | 11.553 | ||
| TIGRFAM | 63 | 96 | 34 | 1.90E-06 | ||
| ProSiteProfiles | 96 | 130 | 35 | 7.059 | ||
| ProSiteProfiles | 131 | 165 | 35 | 9.482 | ||
| Pfam | 136 | 162 | 27 | 0.017 | ||
| TIGRFAM | 137 | 163 | 27 | 0.0028 | ||
| Gene3D | 142 | 182 | 41 | 1.80E-04 | ||
| Pfam | 164 | 194 | 31 | 2.90E-05 | ||
| ProSiteProfiles | 166 | 196 | 31 | 6.456 | ||
| ProSiteProfiles | 264 | 298 | 35 | 9.394 | ||
| Pfam | 264 | 310 | 47 | 1.90E-09 | ||
| ProSiteProfiles | 299 | 333 | 35 | 6.5 | ||
| ProSiteProfiles | 334 | 366 | 33 | 5.623 | ||
| PANTHER | 335 | 646 | 312 | 0 | – | |
| PANTHER | 335 | 646 | 312 | 0 | – | |
| Pfam | 366 | 413 | 48 | 1.00E-09 | ||
| ProSiteProfiles | 367 | 401 | 35 | 9.712 | ||
| TIGRFAM | 369 | 402 | 34 | 3.60E-05 | ||
| ProSiteProfiles | 402 | 436 | 35 | 5.338 | ||
| ProSiteProfiles | 437 | 467 | 31 | 5.645 | ||
| Pfam | 468 | 515 | 48 | 8.10E-09 | ||
| ProSiteProfiles | 468 | 502 | 35 | 10.764 | ||
| TIGRFAM | 471 | 503 | 33 | 7.50E-06 | ||
| ProSiteProfiles | 503 | 538 | 36 | 6.774 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.095 | ||
| Pfam | 543 | 566 | 24 | 0.46 | ||
| Gene3D | 553 | 623 | 71 | 1.80E-04 | ||
| ProSiteProfiles | 571 | 601 | 31 | 5.316 | ||
| ProSiteProfiles | 605 | 639 | 35 | 7.333 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1147560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1147560.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.