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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1374570 |
| Transcript ID | Lj1g3v1374570.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15240032|ref|NP_196258.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 58 | 172 | 115 | 6.60E-230 | – | |
| PANTHER | 58 | 172 | 115 | 6.60E-230 | – | |
| ProSiteProfiles | 80 | 114 | 35 | 7.662 | ||
| TIGRFAM | 83 | 113 | 31 | 0.0028 | ||
| Pfam | 83 | 110 | 28 | 0.5 | ||
| ProSiteProfiles | 138 | 172 | 35 | 10.402 | ||
| Gene3D | 138 | 190 | 53 | 6.70E-07 | ||
| TIGRFAM | 141 | 174 | 34 | 2.60E-05 | ||
| Pfam | 141 | 169 | 29 | 1.10E-04 | ||
| ProSiteProfiles | 173 | 207 | 35 | 7.892 | ||
| ProSiteProfiles | 208 | 242 | 35 | 8.495 | ||
| Pfam | 213 | 239 | 27 | 0.0094 | ||
| ProSiteProfiles | 243 | 273 | 31 | 9.054 | ||
| PANTHER | 247 | 402 | 156 | 6.60E-230 | – | |
| Pfam | 247 | 271 | 25 | 1.10E-05 | ||
| PANTHER | 247 | 402 | 156 | 6.60E-230 | – | |
| TIGRFAM | 248 | 274 | 27 | 1.80E-04 | ||
| ProSiteProfiles | 277 | 311 | 35 | 9.558 | ||
| TIGRFAM | 281 | 313 | 33 | 3.90E-06 | ||
| Pfam | 283 | 323 | 41 | 7.20E-08 | ||
| ProSiteProfiles | 312 | 346 | 35 | 11.203 | ||
| TIGRFAM | 315 | 348 | 34 | 5.20E-07 | ||
| Gene3D | 315 | 348 | 34 | 6.70E-07 | ||
| Pfam | 346 | 395 | 50 | 4.80E-10 | ||
| ProSiteProfiles | 347 | 381 | 35 | 8.89 | ||
| TIGRFAM | 351 | 382 | 32 | 6.80E-04 | ||
| ProSiteProfiles | 382 | 416 | 35 | 8.364 | ||
| TIGRFAM | 385 | 414 | 30 | 3.30E-04 | ||
| PANTHER | 418 | 425 | 8 | 6.60E-230 | – | |
| PANTHER | 418 | 425 | 8 | 6.60E-230 | – | |
| PANTHER | 532 | 598 | 67 | 6.60E-230 | – | |
| PANTHER | 532 | 598 | 67 | 6.60E-230 | – | |
| ProSiteProfiles | 560 | 596 | 37 | 10.654 | ||
| TIGRFAM | 575 | 597 | 23 | 7.90E-04 | ||
| Gene3D | 628 | 731 | 104 | 6.70E-07 | ||
| ProSiteProfiles | 631 | 665 | 35 | 8.287 | ||
| Pfam | 634 | 656 | 23 | 0.0015 | ||
| TIGRFAM | 634 | 657 | 24 | 5.90E-04 | ||
| ProSiteProfiles | 667 | 701 | 35 | 10.052 | ||
| PANTHER | 669 | 794 | 126 | 6.60E-230 | – | |
| PANTHER | 669 | 794 | 126 | 6.60E-230 | – | |
| TIGRFAM | 670 | 702 | 33 | 4.80E-04 | ||
| Pfam | 670 | 699 | 30 | 0.041 | ||
| ProSiteProfiles | 702 | 736 | 35 | 11.071 | ||
| Pfam | 703 | 749 | 47 | 7.30E-13 | ||
| TIGRFAM | 705 | 738 | 34 | 2.00E-07 | ||
| ProSiteProfiles | 737 | 771 | 35 | 10.106 | ||
| TIGRFAM | 739 | 772 | 34 | 3.30E-04 | ||
| ProSiteProfiles | 772 | 804 | 33 | 8.364 | ||
| Pfam | 775 | 794 | 20 | 0.43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1374570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1374570.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.