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Lj1g3v1486310.1

Overview

Field Value
Gene ID Lj1g3v1486310
Transcript ID Lj1g3v1486310.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: SWI/SNF complex subunit SWI3A-like [Cicer arietinum] gi|502133322|ref|XP_004501720.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12802
1 163 163 1.60E-244 –
MobiDBLite
mobidb-lite
1 21 21 – –
PANTHER
PTHR12802:SF2
1 163 163 1.60E-244 –
SUPERFAMILY
SSF46689
21 117 97 9.86E-26
IPR009057
ProSiteProfiles
PS50934
24 121 98 25.459
IPR007526
Gene3D
G3DSA:1.10.10.10
25 121 97 1.50E-28
IPR011991
Pfam
PF04433
27 112 86 7.20E-26
IPR007526
MobiDBLite
mobidb-lite
155 176 22 – –
PANTHER
PTHR12802:SF2
185 330 146 1.60E-244 –
PANTHER
PTHR12802
185 330 146 1.60E-244 –
ProSiteProfiles
PS51293
254 305 52 17.394
IPR017884
SUPERFAMILY
SSF46689
254 312 59 1.09E-08
IPR009057
SMART
SM00717
255 303 49 2.60E-06
IPR001005
Gene3D
G3DSA:1.10.10.60
257 294 38 3.70E-05
IPR009057
Pfam
PF00249
258 297 40 4.50E-09
IPR001005
CDD
cd00167
259 296 38 1.79E-05 –
MobiDBLite
mobidb-lite
330 374 45 – –
PANTHER
PTHR12802
367 555 189 1.60E-244 –
PANTHER
PTHR12802:SF2
367 555 189 1.60E-244 –
MobiDBLite
mobidb-lite
429 463 35 – –
Pfam
PF16495
474 549 76 5.70E-20
IPR032451
Coils
Coil
517 537 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj1g3v1486310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1486310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.