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PS50934

Source: ProSiteProfiles

Description

SWIRM domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Associated Lotus transcripts 26

Transcript Name Description Predicted domains Domain count
Lj0g3v0060059.1
– PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1|
Domains
23
Lj0g3v0096229.1
– PREDICTED: SWI/SNF complex subunit SWI3A-like [Cicer arietinum] gi|502133322|ref|XP_004501720.1|
Domains
9
Lj0g3v0205839.1
– Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357438195|ref|XP_003589373.1|
Domains
21
Lj1g3v1486310.1
– PREDICTED: SWI/SNF complex subunit SWI3A-like [Cicer arietinum] gi|502133322|ref|XP_004501720.1|
Domains
20
Lj1g3v2143360.1
– Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357466899|ref|XP_003603734.1|
Domains
22
Lj1g3v3404340.1
– PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max] gi|356517915|ref|XP_003527631.1|
Domains
20
Lj2g3v0743120.1
– PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max] gi|356529585|ref|XP_003533370.1|
Domains
21
Lj3g3v1249990.1
– PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1|
Domains
18
Lj3g3v1249990.3
– PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1|
Domains
18
Lj3g3v3338570.1
– PREDICTED: SWI/SNF complex subunit SWI3D-like [Cicer arietinum] gi|502149174|ref|XP_004507421.1|
Domains
26
Lj6g3v0214740.1
– PREDICTED: transcriptional adapter ADA2-like [Glycine max] gi|356551285|ref|XP_003544007.1|
Domains
23
Lj6g3v1742780.1
– PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1|
Domains
23
LotjaGi1g1v0264000.1
– SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr|G7J4Z5|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000
Domains
20
LotjaGi1g1v0264000.2
– SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr|G7J4Z5|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000
Domains
20
LotjaGi1g1v0336400.1
– SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0336400
Domains
20
LotjaGi1g1v0425700.1
– Lysine-specific histone demethylase 1 like 1; TAIR: AT4G16310.1 LSD1-like 3; Swiss-Prot: sp|F4JLS1|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3; TrEMBL-Plants: tr|A0A072V301|A0A072V301_MEDTR Polyamine oxidase; Found in the gene: LotjaGi1g1v0425700
Domains
20
LotjaGi1g1v0569600.1
– SWI/SNF complex subunit SWI3B-like protein; TAIR: AT2G33610.1 switch subunit 3; Swiss-Prot: sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B; TrEMBL-Plants: tr|I1K790|I1K790_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569600
Domains
20
LotjaGi2g1v0210600.1
– Lysine-specific histone demethylase 1-1-like protein; TAIR: AT1G62830.1 LSD1-like 1; Swiss-Prot: sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homolog 1; TrEMBL-Plants: tr|I1L4D4|I1L4D4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210600
Domains
20
LotjaGi3g1v0322300.1
– Lysine-specific histone demethylase 1-like protein; TAIR: AT3G13682.1 LSD1-like2; Swiss-Prot: sp|Q9LID0|LDL2_ARATH Lysine-specific histone demethylase 1 homolog 2; TrEMBL-Plants: tr|A0A151TPE1|A0A151TPE1_CAJCA Lysine-specific histone demethylase 1 isogeny 2; Found in the gene: LotjaGi3g1v0322300
Domains
17
LotjaGi3g1v0507400.1
– SWI/SNF complex subunit SWI3D; TAIR: AT4G34430.3 DNA-binding family protein; Swiss-Prot: sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D; TrEMBL-Plants: tr|G7JG42|G7JG42_MEDTR SWI/SNF complex subunit SWI3D; Found in the gene: LotjaGi3g1v0507400
Domains
29
LotjaGi5g1v0131000.1
– Lysine-specific histone demethylase 1-like protein; TAIR: AT3G10390.3 protein FLOWERING locus D-like protein; Swiss-Prot: sp|Q9CAE3|FLD_ARATH Protein FLOWERING LOCUS D; TrEMBL-Plants: tr|V7BKH0|V7BKH0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0131000
Domains
20
LotjaGi6g1v0024000.1
– Transcriptional adapter ADA2; TAIR: AT3G07740.1 ADA2 2A; Swiss-Prot: sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a; TrEMBL-Plants: tr|A0A0R0GGU1|A0A0R0GGU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0024000
Domains
28
LotjaGi6g1v0024000.2
– Transcriptional adapter ADA2; TAIR: AT3G07740.1 ADA2 2A; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|A0A0R0GGU1|A0A0R0GGU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0024000
Domains
28
LotjaGi6g1v0252700_LC.1
– SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi6g1v0252700_LC
Domains
9
LotjaGi6g1v0284200.1
– Transcriptional adapter ADA2; TAIR: AT4G16420.3 ADA2 2B; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|I1MFQ5|I1MFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284200
Domains
28
LotjaGi6g1v0284200.2
– Transcriptional adapter ADA2; TAIR: AT4G16420.3 ADA2 2B; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|I1MFQ5|I1MFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284200
Domains
28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 3.85