Domain Predictions — View

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PF16495

Source: Pfam

Description

SWIRM-associated region 1

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v0862930.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWI/SNF complex subunit SMARCC2 [Medicago truncatula] gi\|357463551\|ref\|XP_003602057.1\|	Domains Coil IPR032451 NON_CYTOPLASMIC_DOMAIN PF16495 PTHR12802 PTHR12802:SF41 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE mobidb-lite	14
Lj1g3v1486310.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: SWI/SNF complex subunit SWI3A-like [Cicer arietinum] gi\|502133322\|ref\|XP_004501720.1\|	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR001005 IPR007526 IPR009057 IPR011991 IPR017884 IPR032451 PF00249 PF04433 PF16495 PS50934 PS51293 PTHR12802 PTHR12802:SF2 SM00717 SSF46689 cd00167 mobidb-lite	20
Lj1g3v3404340.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max] gi\|356517915\|ref\|XP_003527631.1\|	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR001005 IPR007526 IPR009057 IPR011991 IPR017884 IPR032451 PF00249 PF04433 PF16495 PS50934 PS51293 PTHR12802 PTHR12802:SF44 SM00717 SSF46689 cd00167 mobidb-lite	20
Lj3g3v3338570.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: SWI/SNF complex subunit SWI3D-like [Cicer arietinum] gi\|502149174\|ref\|XP_004507421.1\|	Domains G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR000433 IPR001005 IPR007526 IPR009057 IPR011991 IPR017884 IPR032451 PF00249 PF00569 PF04433 PF16495 PS01357 PS50135 PS50934 PS51293 PTHR12802 PTHR12802:SF39 SM00291 SM00717 SSF46689 SSF57850 cd00167 cd02336 mobidb-lite	26
LotjaGi1g1v0264000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp\|Q9XI07\|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr\|G7J4Z5\|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR001005 IPR007526 IPR009057 IPR017884 IPR032451 IPR036388 PF00249 PF04433 PF16495 PS50934 PS51293 PTHR12802 PTHR12802:SF61 SM00717 SSF46689 cd00167 mobidb-lite	20
LotjaGi1g1v0264000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp\|Q9XI07\|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr\|G7J4Z5\|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR001005 IPR007526 IPR009057 IPR017884 IPR032451 IPR036388 PF00249 PF04433 PF16495 PS50934 PS51293 PTHR12802 PTHR12802:SF61 SM00717 SSF46689 cd00167 mobidb-lite	20
LotjaGi1g1v0336400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp\|Q8W475\|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr\|G7J3D7\|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0336400	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR001005 IPR007526 IPR009057 IPR017884 IPR032451 IPR036388 PF00249 PF04433 PF16495 PS50934 PS51293 PTHR12802 PTHR12802:SF41 SM00717 SSF46689 cd00167 mobidb-lite	20
LotjaGi1g1v0569600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWI/SNF complex subunit SWI3B-like protein; TAIR: AT2G33610.1 switch subunit 3; Swiss-Prot: sp\|Q84JG2\|SWI3B_ARATH SWI/SNF complex subunit SWI3B; TrEMBL-Plants: tr\|I1K790\|I1K790_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569600	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.10.60 IPR001005 IPR007526 IPR009057 IPR017884 IPR032451 IPR036388 PF00249 PF04433 PF16495 PS50934 PS51293 PTHR12802 PTHR12802:SF44 SM00717 SSF46689 cd00167 mobidb-lite	20
LotjaGi3g1v0507400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWI/SNF complex subunit SWI3D; TAIR: AT4G34430.3 DNA-binding family protein; Swiss-Prot: sp\|Q8VY05\|SWI3D_ARATH SWI/SNF complex subunit SWI3D; TrEMBL-Plants: tr\|G7JG42\|G7JG42_MEDTR SWI/SNF complex subunit SWI3D; Found in the gene: LotjaGi3g1v0507400	Domains G3DSA:1.10.10.10 G3DSA:1.10.10.60 G3DSA:3.30.60.90 IPR000433 IPR001005 IPR007526 IPR009057 IPR017884 IPR032451 IPR036388 IPR041984 IPR043145 PF00249 PF00569 PF04433 PF16495 PS01357 PS50135 PS50934 PS51293 PTHR12802 PTHR12802:SF39 SM00291 SM00717 SSF46689 SSF57850 cd00167 cd02336 mobidb-lite	29

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11