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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1650130 |
| Transcript ID | Lj1g3v1650130.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357465513|ref|XP_003603041.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 30 | 30 | – | – | |
| Phobius | 16 | 25 | 10 | – | – | |
| Phobius | 26 | 30 | 5 | – | – | |
| Phobius | 31 | 725 | 695 | – | – | |
| Gene3D | 31 | 152 | 122 | 3.90E-07 | ||
| PANTHER | 41 | 350 | 310 | 0 | – | |
| PANTHER | 41 | 350 | 310 | 0 | – | |
| ProSiteProfiles | 88 | 118 | 31 | 5.952 | ||
| Pfam | 119 | 164 | 46 | 2.30E-09 | ||
| ProSiteProfiles | 119 | 153 | 35 | 12.277 | ||
| TIGRFAM | 121 | 154 | 34 | 1.70E-07 | ||
| Gene3D | 187 | 264 | 78 | 3.90E-07 | ||
| ProSiteProfiles | 189 | 219 | 31 | 6.741 | ||
| Pfam | 219 | 265 | 47 | 2.10E-11 | ||
| ProSiteProfiles | 220 | 254 | 35 | 12.43 | ||
| TIGRFAM | 222 | 255 | 34 | 1.60E-08 | ||
| ProSiteProfiles | 284 | 314 | 31 | 5.47 | ||
| Gene3D | 313 | 334 | 22 | 3.90E-07 | ||
| ProSiteProfiles | 315 | 349 | 35 | 8.944 | ||
| Pfam | 318 | 341 | 24 | 0.3 | ||
| Gene3D | 335 | 364 | 30 | 7.10E-05 | ||
| ProSiteProfiles | 385 | 415 | 31 | 6.544 | ||
| PANTHER | 386 | 695 | 310 | 0 | – | |
| PANTHER | 386 | 695 | 310 | 0 | – | |
| Pfam | 390 | 415 | 26 | 1.3 | ||
| ProSiteProfiles | 416 | 450 | 35 | 11.06 | ||
| TIGRFAM | 418 | 452 | 35 | 5.20E-06 | ||
| Pfam | 418 | 464 | 47 | 8.80E-12 | ||
| ProSiteProfiles | 451 | 485 | 35 | 8.254 | ||
| ProSiteProfiles | 486 | 516 | 31 | 7.147 | ||
| Pfam | 491 | 514 | 24 | 0.029 | ||
| Pfam | 516 | 563 | 48 | 2.10E-07 | ||
| ProSiteProfiles | 517 | 551 | 35 | 10.15 | ||
| TIGRFAM | 520 | 552 | 33 | 5.20E-06 | ||
| Gene3D | 520 | 566 | 47 | 7.10E-05 | ||
| ProSiteProfiles | 552 | 587 | 36 | 6.347 | ||
| ProSiteProfiles | 588 | 618 | 31 | 6.741 | ||
| Pfam | 593 | 616 | 24 | 1.1 | ||
| Gene3D | 602 | 673 | 72 | 7.10E-05 | ||
| ProSiteProfiles | 654 | 688 | 35 | 6.149 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1650130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1650130.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.