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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1786020 |
| Transcript ID | Lj1g3v1786020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Alkaline phytoceramidase (aPHC) [Arabidopsis thaliana] gi|334187627|ref|NP_001190292.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 2 | 269 | 268 | 1.10E-173 | – | |
| PANTHER | 2 | 269 | 268 | 1.10E-173 | – | |
| Phobius | 20 | 38 | 19 | – | – | |
| TMHMM | 20 | 37 | 18 | – | – | |
| Phobius | 39 | 58 | 20 | – | – | |
| TMHMM | 57 | 79 | 23 | – | – | |
| Pfam | 58 | 199 | 142 | 1.70E-08 | ||
| Phobius | 59 | 80 | 22 | – | – | |
| Phobius | 81 | 91 | 11 | – | – | |
| TMHMM | 92 | 114 | 23 | – | – | |
| Phobius | 92 | 114 | 23 | – | – | |
| Phobius | 115 | 120 | 6 | – | – | |
| Phobius | 121 | 141 | 21 | – | – | |
| Phobius | 142 | 146 | 5 | – | – | |
| TMHMM | 144 | 166 | 23 | – | – | |
| Phobius | 147 | 166 | 20 | – | – | |
| Phobius | 167 | 172 | 6 | – | – | |
| TMHMM | 173 | 195 | 23 | – | – | |
| Phobius | 173 | 194 | 22 | – | – | |
| Phobius | 195 | 236 | 42 | – | – | |
| TMHMM | 232 | 254 | 23 | – | – | |
| Phobius | 237 | 255 | 19 | – | – | |
| Phobius | 256 | 270 | 15 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ceramide metabolic process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. |
Expression pattern of Lj1g3v1786020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1786020.1, powered by CORGI.
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