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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1788420 |
| Transcript ID | Lj1g3v1788420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357465899|ref|XP_003603234.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 27 | 24 | 0 | – | |
| PANTHER | 4 | 27 | 24 | 0 | – | |
| PANTHER | 43 | 97 | 55 | 0 | – | |
| PANTHER | 43 | 97 | 55 | 0 | – | |
| ProSiteProfiles | 60 | 94 | 35 | 7.388 | ||
| Pfam | 65 | 85 | 21 | 0.76 | ||
| Pfam | 95 | 111 | 17 | 0.16 | ||
| ProSiteProfiles | 168 | 198 | 31 | 7.224 | ||
| Pfam | 174 | 198 | 25 | 0.39 | ||
| ProSiteProfiles | 199 | 233 | 35 | 11.663 | ||
| Pfam | 201 | 230 | 30 | 3.70E-04 | ||
| TIGRFAM | 201 | 234 | 34 | 4.40E-05 | ||
| Gene3D | 253 | 304 | 52 | 3.40E-09 | ||
| ProSiteProfiles | 273 | 307 | 35 | 8.78 | ||
| Pfam | 276 | 304 | 29 | 0.025 | ||
| PANTHER | 278 | 511 | 234 | 0 | – | |
| PANTHER | 278 | 511 | 234 | 0 | – | |
| ProSiteProfiles | 308 | 342 | 35 | 5.36 | ||
| ProSiteProfiles | 343 | 373 | 31 | 6.971 | ||
| Pfam | 348 | 373 | 26 | 0.018 | ||
| ProSiteProfiles | 374 | 408 | 35 | 9.482 | ||
| Pfam | 376 | 405 | 30 | 0.064 | ||
| ProSiteProfiles | 409 | 444 | 36 | 5.7 | ||
| ProSiteProfiles | 445 | 475 | 31 | 6.467 | ||
| Pfam | 450 | 470 | 21 | 0.021 | ||
| Gene3D | 474 | 475 | 2 | 3.40E-09 | ||
| ProSiteProfiles | 476 | 510 | 35 | 9.865 | ||
| TIGRFAM | 479 | 511 | 33 | 5.90E-05 | ||
| Pfam | 479 | 507 | 29 | 4.20E-04 | ||
| ProSiteProfiles | 546 | 576 | 31 | 5.711 | ||
| PANTHER | 547 | 856 | 310 | 0 | – | |
| PANTHER | 547 | 856 | 310 | 0 | – | |
| Pfam | 576 | 622 | 47 | 6.40E-12 | ||
| ProSiteProfiles | 577 | 611 | 35 | 11.663 | ||
| TIGRFAM | 579 | 613 | 35 | 9.20E-09 | ||
| ProSiteProfiles | 612 | 646 | 35 | 5.514 | ||
| ProSiteProfiles | 647 | 677 | 31 | 9.383 | ||
| SUPERFAMILY | 648 | 836 | 189 | 3.29E-05 | ||
| Gene3D | 650 | 698 | 49 | 3.40E-09 | ||
| Pfam | 651 | 676 | 26 | 1.30E-04 | ||
| TIGRFAM | 652 | 676 | 25 | 0.0023 | ||
| ProSiteProfiles | 678 | 712 | 35 | 11.772 | ||
| Pfam | 679 | 725 | 47 | 3.50E-10 | ||
| TIGRFAM | 681 | 713 | 33 | 2.30E-08 | ||
| ProSiteProfiles | 713 | 748 | 36 | 8.298 | ||
| ProSiteProfiles | 749 | 783 | 35 | 8.484 | ||
| Pfam | 752 | 780 | 29 | 0.0088 | ||
| TIGRFAM | 753 | 780 | 28 | 0.0018 | ||
| Gene3D | 766 | 839 | 74 | 3.40E-09 | ||
| ProSiteProfiles | 815 | 849 | 35 | 6.654 | ||
| Pfam | 851 | 975 | 125 | 6.20E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v1788420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1788420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.