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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1856380 |
| Transcript ID | Lj1g3v1856380.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356515262|ref|XP_003526320.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 551 | 519 | 0 | – | |
| PANTHER | 33 | 551 | 519 | 0 | ||
| Hamap | 59 | 544 | 486 | 36.03 | ||
| SUPERFAMILY | 59 | 368 | 310 | 8.04E-94 | – | |
| CDD | 60 | 361 | 302 | 1.26E-104 | ||
| TIGRFAM | 61 | 542 | 482 | 2.60E-158 | ||
| Pfam | 72 | 368 | 297 | 3.40E-124 | ||
| Gene3D | 77 | 361 | 285 | 1.80E-105 | ||
| PRINTS | 82 | 93 | 12 | 6.60E-29 | ||
| PRINTS | 118 | 127 | 10 | 6.60E-29 | ||
| PRINTS | 247 | 265 | 19 | 6.60E-29 | ||
| PRINTS | 278 | 299 | 22 | 6.60E-29 | ||
| Gene3D | 365 | 471 | 107 | 2.20E-07 | – | |
| SUPERFAMILY | 399 | 542 | 144 | 2.62E-24 | ||
| Coils | 478 | 498 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Cysteine-tRNA ligase activity | Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Cysteinyl-tRNA aminoacylation | The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. A cysteinyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a cysteine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of Lj1g3v1856380.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1856380.2, powered by CORGI.
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