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Lj1g3v1932550.1

Overview

Field Value
Gene ID Lj1g3v1932550
Transcript ID Lj1g3v1932550.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pescadillo homolog isoform X2 [Cicer arietinum] gi|502154817|ref|XP_004509849.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12221
4 586 583 2.40E-279 –
PANTHER
PTHR12221:SF6
4 586 583 2.40E-279 –
Hamap
MF_03028
5 586 582 14.647
IPR010613
Pfam
PF06732
10 264 255 1.10E-105
IPR010613
Coils
Coil
75 104 30 – –
Gene3D
G3DSA:3.40.50.10190
337 427 91 7.50E-18
IPR001357
ProSiteProfiles
PS50172
342 432 91 13.757
IPR001357
SUPERFAMILY
SSF52113
343 433 91 3.43E-15
IPR001357
SMART
SM00292
344 422 79 8.00E-06
IPR001357
Pfam
PF16589
344 431 88 2.60E-09
IPR001357
CDD
cd00027
349 419 71 1.43E-04
IPR001357
MobiDBLite
mobidb-lite
528 560 33 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005730
Cellular component Nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
Subterm of
Part of
GO:0042254
Biological process Ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v1932550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1932550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.