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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1966250 |
| Transcript ID | Lj1g3v1966250.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: plasma membrane ATPase 4-like [Cicer arietinum] gi|502132162|ref|XP_004501246.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 62 | 62 | – | – | |
| PANTHER | 4 | 594 | 591 | 0 | – | |
| PANTHER | 4 | 594 | 591 | 0 | – | |
| SUPERFAMILY | 14 | 132 | 119 | 1.57E-52 | – | |
| SMART | 15 | 87 | 73 | 9.30E-23 | ||
| Pfam | 19 | 81 | 63 | 2.30E-15 | ||
| Gene3D | 32 | 66 | 35 | 1.40E-33 | ||
| TIGRFAM | 34 | 594 | 561 | 2.90E-244 | ||
| Phobius | 63 | 86 | 24 | – | – | |
| Gene3D | 67 | 126 | 60 | 3.70E-24 | ||
| Phobius | 87 | 97 | 11 | – | – | |
| Phobius | 98 | 114 | 17 | – | – | |
| Pfam | 100 | 312 | 213 | 2.20E-53 | ||
| TIGRFAM | 101 | 338 | 238 | 2.20E-32 | ||
| Phobius | 115 | 232 | 118 | – | – | |
| Gene3D | 127 | 221 | 95 | 1.40E-33 | ||
| SUPERFAMILY | 132 | 221 | 90 | 2.09E-23 | – | |
| PRINTS | 171 | 185 | 15 | 7.60E-32 | – | |
| SUPERFAMILY | 221 | 315 | 95 | 1.57E-52 | – | |
| Phobius | 233 | 259 | 27 | – | – | |
| TMHMM | 236 | 258 | 23 | – | – | |
| Gene3D | 237 | 337 | 101 | 3.70E-24 | ||
| Phobius | 260 | 270 | 11 | – | – | |
| TMHMM | 271 | 293 | 23 | – | – | |
| Phobius | 271 | 293 | 23 | – | – | |
| Phobius | 294 | 597 | 304 | – | – | |
| Pfam | 317 | 594 | 278 | 6.80E-18 | – | |
| SUPERFAMILY | 317 | 594 | 278 | 1.40E-28 | ||
| PRINTS | 321 | 335 | 15 | 7.60E-32 | – | |
| ProSitePatterns | 323 | 329 | 7 | – | ||
| Gene3D | 338 | 475 | 138 | 2.70E-31 | ||
| PRINTS | 437 | 455 | 19 | 2.80E-27 | ||
| PRINTS | 475 | 486 | 12 | 7.60E-32 | – | |
| Gene3D | 476 | 594 | 119 | 1.20E-35 | ||
| PRINTS | 497 | 507 | 11 | 7.60E-32 | – | |
| PRINTS | 552 | 568 | 17 | 2.80E-27 | ||
| PRINTS | 580 | 597 | 18 | 7.60E-32 | – | |
| PRINTS | 580 | 596 | 17 | 2.80E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Proton-exporting ATPase activity, phosphorylative mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Proton export across plasma membrane | The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region. |
Expression pattern of Lj1g3v1966250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1966250.1, powered by CORGI.
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