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PF04926

Source: Pfam

Description

Poly(A) polymerase predicted RNA binding domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0043631
Biological process RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
Subterm of

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
Lj0g3v0163859.1
– PREDICTED: poly(A) polymerase-like [Cicer arietinum] gi|502163575|ref|XP_004512881.1|
Domains
13
Lj1g3v2095480.1
– PREDICTED: poly(A) polymerase-like [Glycine max] gi|356515639|ref|XP_003526506.1|
Domains
17
Lj3g3v2318240.1
– PREDICTED: poly(A) polymerase-like isoform X3 [Cicer arietinum] gi|502156117|ref|XP_004510318.1|
Domains
13
Lj3g3v2318240.2
– PREDICTED: poly(A) polymerase-like [Glycine max] gi|356528904|ref|XP_003533037.1|
Domains
17
Lj3g3v2318240.3
– PREDICTED: poly(A) polymerase-like isoform X3 [Cicer arietinum] gi|502156117|ref|XP_004510318.1|
Domains
17
Lj3g3v2318240.4
– PREDICTED: poly(A) polymerase-like isoform X3 [Cicer arietinum] gi|502156117|ref|XP_004510318.1|
Domains
17
Lj4g3v3114000.1
– Poly(A) polymerase [Medicago truncatula] gi|357521515|ref|XP_003631046.1|
Domains
9
Lj4g3v3114000.2
– Poly(A) polymerase [Medicago truncatula] gi|357521515|ref|XP_003631046.1|
Domains
14
Lj5g3v0069830.1
– Poly(A) polymerase [Medicago truncatula] gi|357521515|ref|XP_003631046.1|
Domains
13
LotjaGi1g1v0409600.1
– Poly(A) polymerase-like protein; TAIR: AT4G32850.5 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A072V3Z3|A0A072V3Z3_MEDTR Poly(A) polymerase-like protein; Found in the gene: LotjaGi1g1v0409600
Domains
18
LotjaGi1g1v0409600.2
– Poly(A) polymerase-like protein; TAIR: AT4G32850.2 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|I1K9H4|I1K9H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0409600
Domains
18
LotjaGi2g1v0201600.1
– Poly(A) polymerase; TAIR: AT1G17980.1 poly(A) polymerase 1; Swiss-Prot: sp|Q9LMT2|PAPS1_ARATH Nuclear poly(A) polymerase 1; TrEMBL-Plants: tr|I1L486|I1L486_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0201600
Domains
22
LotjaGi3g1v0371900.1
– Poly(A) polymerase; TAIR: AT4G32850.10 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900
Domains
18
LotjaGi3g1v0371900.2
– Poly(A) polymerase; TAIR: AT4G32850.10 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900
Domains
18
LotjaGi3g1v0371900.3
– Poly(A) polymerase; TAIR: AT4G32850.5 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900
Domains
18
LotjaGi4g1v0447300_LC.1
– Poly(A) polymerase; TAIR: AT1G17980.1 poly(A) polymerase 1; Swiss-Prot: sp|Q9LMT2|PAPS1_ARATH Nuclear poly(A) polymerase 1; TrEMBL-Plants: tr|A0A061FVR9|A0A061FVR9_THECC Poly(A) polymerase 1 isoform 1; Found in the gene: LotjaGi4g1v0447300_LC
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF81631 SUPERFAMILY 1 6.25