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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2095550 |
| Transcript ID | Lj1g3v2095550.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 84 | 84 | 1.20E-264 | – | |
| PANTHER | 1 | 84 | 84 | 1.20E-264 | – | |
| MobiDBLite | 1 | 31 | 31 | – | – | |
| SUPERFAMILY | 29 | 88 | 60 | 7.45E-14 | ||
| SMART | 33 | 108 | 76 | 2.70E-09 | ||
| ProSiteProfiles | 34 | 103 | 70 | 14.823 | ||
| Gene3D | 35 | 89 | 55 | 4.80E-15 | ||
| Pfam | 37 | 89 | 53 | 2.20E-12 | ||
| CDD | 59 | 89 | 31 | 3.65E-04 | – | |
| MobiDBLite | 84 | 152 | 69 | – | – | |
| Coils | 89 | 116 | 28 | – | – | |
| PANTHER | 156 | 562 | 407 | 1.20E-264 | – | |
| PANTHER | 156 | 562 | 407 | 1.20E-264 | – | |
| Gene3D | 178 | 258 | 81 | 1.50E-15 | ||
| SUPERFAMILY | 180 | 263 | 84 | 2.92E-13 | ||
| SMART | 187 | 262 | 76 | 2.30E-09 | ||
| ProSiteProfiles | 188 | 257 | 70 | 14.969 | ||
| CDD | 190 | 258 | 69 | 1.23E-16 | – | |
| Pfam | 191 | 257 | 67 | 3.50E-11 | ||
| MobiDBLite | 265 | 299 | 35 | – | – | |
| SUPERFAMILY | 327 | 415 | 89 | 3.96E-13 | ||
| Gene3D | 327 | 403 | 77 | 5.30E-15 | ||
| SMART | 328 | 404 | 77 | 1.40E-09 | ||
| ProSiteProfiles | 329 | 396 | 68 | 14.718 | ||
| Pfam | 331 | 384 | 54 | 8.80E-12 | ||
| CDD | 331 | 400 | 70 | 1.26E-16 | – | |
| SMART | 413 | 488 | 76 | 1.50E-08 | ||
| SUPERFAMILY | 414 | 497 | 84 | 4.27E-15 | ||
| ProSiteProfiles | 414 | 483 | 70 | 15.472 | ||
| Gene3D | 417 | 488 | 72 | 5.00E-16 | ||
| Pfam | 418 | 483 | 66 | 1.20E-14 | ||
| CDD | 418 | 484 | 67 | 4.82E-19 | – | |
| SUPERFAMILY | 607 | 677 | 71 | 7.16E-13 | ||
| SMART | 607 | 677 | 71 | 3.30E-05 | ||
| Gene3D | 608 | 676 | 69 | 6.20E-14 | ||
| ProSiteProfiles | 608 | 672 | 65 | 13.628 | ||
| Pfam | 610 | 673 | 64 | 7.80E-09 | ||
| CDD | 623 | 673 | 51 | 1.65E-06 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj1g3v2095550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2095550.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.