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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2292800 |
| Transcript ID | Lj1g3v2292800.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like isoform X2 [Cicer arietinum] gi|502131125|ref|XP_004500883.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 269 | 269 | 3.40E-172 | – | |
| PANTHER | 1 | 269 | 269 | 3.40E-172 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 10.337 | ||
| Pfam | 13 | 39 | 27 | 5.30E-04 | ||
| TIGRFAM | 13 | 45 | 33 | 2.90E-06 | ||
| Gene3D | 22 | 253 | 232 | 8.70E-13 | ||
| SUPERFAMILY | 26 | 76 | 51 | 7.06E-06 | – | |
| Pfam | 43 | 89 | 47 | 6.90E-17 | ||
| ProSiteProfiles | 44 | 78 | 35 | 14.787 | ||
| TIGRFAM | 46 | 78 | 33 | 2.00E-11 | ||
| ProSiteProfiles | 79 | 113 | 35 | 9.964 | ||
| TIGRFAM | 82 | 115 | 34 | 7.30E-07 | ||
| Pfam | 102 | 162 | 61 | 2.90E-09 | ||
| SUPERFAMILY | 113 | 213 | 101 | 7.06E-06 | – | |
| ProSiteProfiles | 114 | 148 | 35 | 11.849 | ||
| TIGRFAM | 116 | 149 | 34 | 2.30E-07 | ||
| ProSiteProfiles | 149 | 183 | 35 | 11.838 | ||
| TIGRFAM | 152 | 184 | 33 | 5.90E-07 | ||
| ProSiteProfiles | 184 | 218 | 35 | 9.295 | ||
| Pfam | 185 | 231 | 47 | 2.50E-11 | ||
| TIGRFAM | 189 | 220 | 32 | 3.70E-04 | ||
| ProSiteProfiles | 219 | 253 | 35 | 11.674 | ||
| TIGRFAM | 221 | 254 | 34 | 5.30E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2292800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2292800.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.