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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2337910 |
| Transcript ID | Lj1g3v2337910.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | chloroplast omega-3 fatty acid desaturase [Vigna unguiculata] gi|164521896|gb|ABY60737.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 127 | 127 | – | – | |
| Pfam | 3 | 141 | 139 | 2.10E-49 | ||
| PANTHER | 55 | 439 | 385 | 1.30E-290 | – | |
| PANTHER | 55 | 439 | 385 | 1.30E-290 | – | |
| CDD | 120 | 376 | 257 | 1.02E-62 | – | |
| Phobius | 128 | 146 | 19 | – | – | |
| TMHMM | 134 | 156 | 23 | – | – | |
| Phobius | 147 | 151 | 5 | – | – | |
| Pfam | 149 | 391 | 243 | 7.90E-24 | ||
| Phobius | 152 | 170 | 19 | – | – | |
| Phobius | 171 | 270 | 100 | – | – | |
| TMHMM | 271 | 293 | 23 | – | – | |
| Phobius | 271 | 292 | 22 | – | – | |
| Phobius | 293 | 297 | 5 | – | – | |
| Phobius | 298 | 318 | 21 | – | – | |
| TMHMM | 300 | 322 | 23 | – | – | |
| Phobius | 319 | 440 | 122 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj1g3v2337910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2337910.1, powered by CORGI.
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