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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2546300 |
| Transcript ID | Lj1g3v2546300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: RING finger and transmembrane domain-containing protein 2-like isoform X1 [Cicer arietinum] gi|502104614|ref|XP_004492595.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 157 | 157 | – | – | |
| PANTHER | 1 | 116 | 116 | 6.00E-300 | – | |
| PANTHER | 1 | 116 | 116 | 6.00E-300 | – | |
| MobiDBLite | 1 | 25 | 25 | – | – | |
| MobiDBLite | 83 | 148 | 66 | – | – | |
| PANTHER | 132 | 444 | 313 | 6.00E-300 | – | |
| PANTHER | 132 | 444 | 313 | 6.00E-300 | – | |
| Phobius | 158 | 177 | 20 | – | – | |
| TMHMM | 170 | 192 | 23 | – | – | |
| Phobius | 178 | 182 | 5 | – | – | |
| Phobius | 183 | 201 | 19 | – | – | |
| Phobius | 202 | 212 | 11 | – | – | |
| Phobius | 213 | 234 | 22 | – | – | |
| TMHMM | 213 | 235 | 23 | – | – | |
| Phobius | 235 | 253 | 19 | – | – | |
| Phobius | 254 | 282 | 29 | – | – | |
| TMHMM | 258 | 280 | 23 | – | – | |
| Phobius | 283 | 302 | 20 | – | – | |
| TMHMM | 300 | 322 | 23 | – | – | |
| Phobius | 303 | 320 | 18 | – | – | |
| Phobius | 321 | 325 | 5 | – | – | |
| Phobius | 326 | 344 | 19 | – | – | |
| Phobius | 345 | 444 | 100 | – | – | |
| SUPERFAMILY | 376 | 426 | 51 | 4.86E-18 | – | |
| Pfam | 381 | 424 | 44 | 5.20E-10 | – | |
| Gene3D | 381 | 431 | 51 | 9.40E-18 | ||
| ProSiteProfiles | 383 | 421 | 39 | 13.596 | ||
| SMART | 383 | 420 | 38 | 1.70E-07 | ||
| CDD | 383 | 424 | 42 | 1.76E-13 | – | |
| ProSitePatterns | 398 | 407 | 10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj1g3v2546300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2546300.1, powered by CORGI.
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