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Lj1g3v2611340.1

Overview

Field Value
Gene ID Lj1g3v2611340
Transcript ID Lj1g3v2611340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356532068|ref|XP_003534596.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
67 125 59 – –
PANTHER
PTHR24326
82 193 112 0 –
PANTHER
PTHR24326:SF303
82 193 112 0 –
SUPERFAMILY
SSF46689
100 173 74 1.50E-20
IPR009057
Gene3D
G3DSA:1.10.10.60
104 174 71 2.50E-21
IPR009057
ProSiteProfiles
PS50071
114 174 61 17.378
IPR001356
SMART
SM00389
115 178 64 4.60E-17
IPR001356
CDD
cd00086
116 174 59 2.58E-18 –
Pfam
PF00046
117 172 56 1.60E-18
IPR001356
ProSitePatterns
PS00027
149 172 24 –
IPR017970
Coils
Coil
168 203 36 – –
PANTHER
PTHR24326:SF303
222 235 14 0 –
PANTHER
PTHR24326
222 235 14 0 –
ProSiteProfiles
PS50848
316 551 236 44.99
IPR002913
SUPERFAMILY
SSF55961
318 548 231 5.22E-32 –
CDD
cd08875
320 547 228 1.58E-119 –
SMART
SM00234
325 548 224 6.00E-44
IPR002913
Pfam
PF01852
325 548 224 7.90E-55
IPR002913
PANTHER
PTHR24326
524 807 284 0 –
PANTHER
PTHR24326:SF303
524 807 284 0 –
SUPERFAMILY
SSF55961
576 803 228 1.88E-22 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v2611340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2611340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.