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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2626310 |
| Transcript ID | Lj1g3v2626310.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 1 [Glycine max] gi|356532044|ref|XP_003534584.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 252 | 252 | – | – | |
| PANTHER | 2 | 700 | 699 | 0 | – | |
| PANTHER | 2 | 700 | 699 | 0 | – | |
| CDD | 2 | 141 | 140 | 2.20E-74 | – | |
| ProSiteProfiles | 2 | 145 | 144 | 21.024 | ||
| Pfam | 4 | 50 | 47 | 1.30E-06 | ||
| Pfam | 89 | 145 | 57 | 1.20E-07 | ||
| SUPERFAMILY | 238 | 443 | 206 | 7.72E-27 | ||
| TMHMM | 248 | 270 | 23 | – | – | |
| Phobius | 253 | 271 | 19 | – | – | |
| Gene3D | 255 | 441 | 187 | 1.10E-18 | – | |
| Pfam | 259 | 633 | 375 | 5.10E-20 | ||
| CDD | 260 | 696 | 437 | 4.59E-11 | ||
| Phobius | 272 | 282 | 11 | – | – | |
| TMHMM | 277 | 299 | 23 | – | – | |
| Phobius | 283 | 306 | 24 | – | – | |
| Phobius | 307 | 317 | 11 | – | – | |
| TMHMM | 314 | 336 | 23 | – | – | |
| Phobius | 318 | 335 | 18 | – | – | |
| Phobius | 336 | 340 | 5 | – | – | |
| Phobius | 341 | 359 | 19 | – | – | |
| Phobius | 360 | 379 | 20 | – | – | |
| Phobius | 380 | 402 | 23 | – | – | |
| TMHMM | 380 | 402 | 23 | – | – | |
| Phobius | 403 | 413 | 11 | – | – | |
| Phobius | 414 | 434 | 21 | – | – | |
| TMHMM | 417 | 434 | 18 | – | – | |
| Phobius | 435 | 515 | 81 | – | – | |
| Coils | 474 | 494 | 21 | – | – | |
| SUPERFAMILY | 491 | 689 | 199 | 7.72E-27 | ||
| Gene3D | 510 | 649 | 140 | 3.60E-04 | – | |
| TMHMM | 516 | 538 | 23 | – | – | |
| Phobius | 516 | 536 | 21 | – | – | |
| Phobius | 537 | 547 | 11 | – | – | |
| Phobius | 548 | 567 | 20 | – | – | |
| TMHMM | 548 | 570 | 23 | – | – | |
| Phobius | 568 | 578 | 11 | – | – | |
| Phobius | 579 | 599 | 21 | – | – | |
| TMHMM | 579 | 601 | 23 | – | – | |
| Phobius | 600 | 604 | 5 | – | – | |
| Phobius | 605 | 628 | 24 | – | – | |
| TMHMM | 606 | 628 | 23 | – | – | |
| Phobius | 629 | 677 | 49 | – | – | |
| TMHMM | 673 | 695 | 23 | – | – | |
| Phobius | 678 | 697 | 20 | – | – | |
| Phobius | 698 | 700 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v2626310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2626310.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.