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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2627650 |
| Transcript ID | Lj1g3v2627650.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max] gi|356530090|ref|XP_003533617.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 573 | 551 | 0 | – | |
| PANTHER | 23 | 573 | 551 | 0 | – | |
| ProSiteProfiles | 61 | 95 | 35 | 7.476 | ||
| Pfam | 65 | 92 | 28 | 0.16 | ||
| ProSiteProfiles | 96 | 130 | 35 | 6.807 | ||
| ProSiteProfiles | 131 | 161 | 31 | 7.125 | ||
| Pfam | 136 | 162 | 27 | 1.40E-04 | ||
| TIGRFAM | 136 | 163 | 28 | 7.20E-05 | ||
| ProSiteProfiles | 162 | 196 | 35 | 10.841 | ||
| Pfam | 164 | 194 | 31 | 2.10E-05 | ||
| TIGRFAM | 164 | 197 | 34 | 1.90E-06 | ||
| Gene3D | 173 | 324 | 152 | 3.30E-11 | ||
| SUPERFAMILY | 223 | 326 | 104 | 4.45E-06 | – | |
| ProSiteProfiles | 232 | 262 | 31 | 8.879 | ||
| TIGRFAM | 237 | 265 | 29 | 5.40E-06 | ||
| Pfam | 262 | 290 | 29 | 5.70E-06 | ||
| ProSiteProfiles | 263 | 293 | 31 | 10.052 | ||
| TIGRFAM | 265 | 294 | 30 | 3.80E-06 | ||
| Pfam | 294 | 341 | 48 | 3.60E-12 | ||
| ProSiteProfiles | 294 | 328 | 35 | 13.055 | ||
| TIGRFAM | 296 | 330 | 35 | 1.30E-09 | ||
| ProSiteProfiles | 329 | 363 | 35 | 7.081 | ||
| SUPERFAMILY | 361 | 423 | 63 | 4.45E-06 | – | |
| Gene3D | 361 | 439 | 79 | 3.30E-11 | ||
| ProSiteProfiles | 364 | 394 | 31 | 10.907 | ||
| TIGRFAM | 369 | 395 | 27 | 2.10E-07 | ||
| Pfam | 369 | 394 | 26 | 1.20E-07 | ||
| ProSiteProfiles | 395 | 429 | 35 | 11.641 | ||
| TIGRFAM | 397 | 430 | 34 | 7.00E-06 | ||
| Pfam | 397 | 427 | 31 | 5.40E-06 | ||
| ProSiteProfiles | 430 | 460 | 31 | 6.182 | ||
| Pfam | 440 | 459 | 20 | 0.49 | ||
| ProSiteProfiles | 466 | 496 | 31 | 5.415 | ||
| Gene3D | 496 | 532 | 37 | 3.30E-11 | ||
| ProSiteProfiles | 532 | 566 | 35 | 5.974 | ||
| MobiDBLite | 561 | 584 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2627650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2627650.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.