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Lj1g3v2893970.1

Overview

Field Value
Gene ID Lj1g3v2893970
Transcript ID Lj1g3v2893970.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like isoform X1 [Cicer arietinum] gi|502106207|ref|XP_004492888.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 12 12 – –
PANTHER
PTHR27000
1 215 215 1.20E-99 –
Phobius
SIGNAL_PEPTIDE
1 30 30 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 14 14 – –
PANTHER
PTHR27000:SF10
1 215 215 1.20E-99 –
TMHMM
TMhelix
12 31 20 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
15 25 11 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
26 30 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
31 221 191 – –
SUPERFAMILY
SSF52058
31 200 170 9.52E-29
IPR032675
Pfam
PF08263
32 74 43 7.20E-07
IPR013210
Gene3D
G3DSA:3.80.10.10
33 195 163 1.50E-32
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v2893970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2893970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.