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Lj1g3v2952410.1

Overview

Field Value
Gene ID Lj1g3v2952410
Transcript ID Lj1g3v2952410.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31683:SF14
1 382 382 3.70E-270 –
PANTHER
PTHR31683
1 382 382 3.70E-270 –
MobiDBLite
mobidb-lite
1 26 26 – –
Gene3D
G3DSA:2.160.20.10
32 344 313 1.40E-124
IPR012334
SUPERFAMILY
SSF51126
33 373 341 5.62E-94
IPR011050
PRINTS
PR00807
55 72 18 8.40E-79
IPR018082
PRINTS
PR00807
79 104 26 8.40E-79
IPR018082
SMART
SM00656
107 304 198 2.10E-99
IPR002022
PRINTS
PR00807
115 131 17 8.40E-79
IPR018082
Pfam
PF00544
116 298 183 1.10E-20
IPR002022
PRINTS
PR00807
179 200 22 8.40E-79
IPR018082
PRINTS
PR00807
259 278 20 8.40E-79
IPR018082
PRINTS
PR00807
281 300 20 8.40E-79
IPR018082
PRINTS
PR00807
323 347 25 8.40E-79
IPR018082
PRINTS
PR00807
353 376 24 8.40E-79
IPR018082
SUPERFAMILY
SSF52058
443 604 162 1.93E-23
IPR032675
Gene3D
G3DSA:3.80.10.10
445 607 163 5.30E-25
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v2952410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2952410.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.