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Lj1g3v2979180.1

Overview

Field Value
Gene ID Lj1g3v2979180
Transcript ID Lj1g3v2979180.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356531744|ref|XP_003534436.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 45 45 – –
PANTHER
PTHR10288:SF151
7 96 90 0 –
PANTHER
PTHR10288
7 96 90 0 –
SUPERFAMILY
SSF54791
41 102 62 2.58E-13
IPR004088
Gene3D
G3DSA:3.30.1370.10
41 102 62 3.90E-14
IPR004088
SMART
SM00322
45 118 74 1.10E-07
IPR004087
ProSiteProfiles
PS50084
46 113 68 13.418
IPR004088
CDD
cd02396
48 124 77 1.07E-17 –
Pfam
PF00013
49 103 55 2.30E-11
IPR004088
PANTHER
PTHR10288:SF151
114 522 409 0 –
PANTHER
PTHR10288
114 522 409 0 –
SUPERFAMILY
SSF54791
135 223 89 4.11E-18
IPR004088
Gene3D
G3DSA:3.30.1370.10
145 221 77 6.20E-20
IPR004088
SMART
SM00322
145 220 76 7.70E-15
IPR004087
ProSiteProfiles
PS50084
146 215 70 18.743
IPR004088
CDD
cd02396
148 216 69 1.67E-20 –
Pfam
PF00013
149 215 67 1.50E-16
IPR004088
SUPERFAMILY
SSF54791
284 338 55 2.85E-10
IPR004088
SMART
SM00322
287 363 77 1.90E-04
IPR004087
ProSiteProfiles
PS50084
288 359 72 13.062
IPR004088
Gene3D
G3DSA:3.30.1370.10
288 339 52 4.70E-12
IPR004088
CDD
cd02396
290 339 50 1.36E-12 –
Pfam
PF00013
291 338 48 4.50E-10
IPR004088
SMART
SM00322
373 448 76 9.60E-11
IPR004087
SUPERFAMILY
SSF54791
374 449 76 2.73E-14
IPR004088
ProSiteProfiles
PS50084
374 443 70 16.018
IPR004088
Gene3D
G3DSA:3.30.1370.10
375 448 74 1.90E-16
IPR004088
CDD
cd02396
376 444 69 1.34E-18 –
Pfam
PF00013
376 441 66 1.30E-13
IPR004088
MobiDBLite
mobidb-lite
478 518 41 – –
MobiDBLite
mobidb-lite
532 554 23 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v2979180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2979180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.