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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2980340 |
| Transcript ID | Lj1g3v2980340.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] gi|356513749|ref|XP_003525573.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 24 | 24 | – | – | |
| ProSiteProfiles | 47 | 81 | 35 | 5.733 | ||
| ProSiteProfiles | 141 | 175 | 35 | 6.248 | ||
| PANTHER | 152 | 349 | 198 | 6.30E-232 | – | |
| PANTHER | 152 | 349 | 198 | 6.30E-232 | – | |
| Pfam | 175 | 224 | 50 | 3.70E-11 | ||
| ProSiteProfiles | 176 | 210 | 35 | 9.799 | ||
| TIGRFAM | 179 | 211 | 33 | 1.30E-04 | ||
| Gene3D | 181 | 264 | 84 | 6.10E-07 | ||
| ProSiteProfiles | 211 | 245 | 35 | 12.704 | ||
| TIGRFAM | 213 | 247 | 35 | 4.50E-09 | ||
| ProSiteProfiles | 246 | 280 | 35 | 5.908 | ||
| ProSiteProfiles | 281 | 315 | 35 | 10.128 | ||
| TIGRFAM | 283 | 317 | 35 | 5.00E-06 | ||
| Pfam | 312 | 343 | 32 | 9.00E-08 | ||
| ProSiteProfiles | 316 | 350 | 35 | 10.994 | ||
| TIGRFAM | 318 | 351 | 34 | 5.60E-06 | ||
| Gene3D | 319 | 464 | 146 | 6.10E-07 | ||
| ProSiteProfiles | 351 | 385 | 35 | 8.035 | ||
| TIGRFAM | 357 | 386 | 30 | 0.0015 | ||
| Pfam | 382 | 414 | 33 | 6.10E-08 | ||
| PANTHER | 385 | 520 | 136 | 6.30E-232 | – | |
| PANTHER | 385 | 520 | 136 | 6.30E-232 | – | |
| ProSiteProfiles | 386 | 420 | 35 | 11.268 | ||
| TIGRFAM | 388 | 421 | 34 | 2.30E-07 | ||
| ProSiteProfiles | 421 | 455 | 35 | 12.288 | ||
| Pfam | 422 | 468 | 47 | 6.00E-13 | ||
| TIGRFAM | 425 | 457 | 33 | 7.90E-09 | ||
| ProSiteProfiles | 456 | 490 | 35 | 12.277 | ||
| TIGRFAM | 458 | 491 | 34 | 4.10E-05 | ||
| ProSiteProfiles | 491 | 525 | 35 | 8.802 | ||
| TIGRFAM | 494 | 526 | 33 | 0.0023 | ||
| Pfam | 497 | 523 | 27 | 0.13 | ||
| Pfam | 526 | 573 | 48 | 1.80E-07 | ||
| ProSiteProfiles | 526 | 560 | 35 | 10.424 | ||
| ProSiteProfiles | 561 | 595 | 35 | 9.021 | ||
| Pfam | 595 | 623 | 29 | 0.026 | ||
| ProSiteProfiles | 596 | 626 | 31 | 5.777 | ||
| ProSiteProfiles | 627 | 661 | 35 | 9.021 | ||
| Pfam | 631 | 658 | 28 | 0.087 | ||
| PANTHER | 657 | 843 | 187 | 6.30E-232 | – | |
| PANTHER | 657 | 843 | 187 | 6.30E-232 | – | |
| ProSiteProfiles | 662 | 696 | 35 | 9.131 | ||
| TIGRFAM | 665 | 698 | 34 | 0.0023 | ||
| Pfam | 696 | 742 | 47 | 8.50E-19 | ||
| ProSiteProfiles | 697 | 731 | 35 | 14.316 | ||
| TIGRFAM | 700 | 733 | 34 | 7.10E-12 | ||
| ProSiteProfiles | 732 | 766 | 35 | 7.289 | ||
| ProSiteProfiles | 767 | 801 | 35 | 10.972 | ||
| Pfam | 767 | 815 | 49 | 1.50E-14 | ||
| TIGRFAM | 769 | 803 | 35 | 3.60E-05 | ||
| ProSiteProfiles | 802 | 836 | 35 | 12.145 | ||
| TIGRFAM | 804 | 837 | 34 | 3.90E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2980340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2980340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.