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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2980340 |
| Transcript ID | Lj1g3v2980340.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] gi|356513749|ref|XP_003525573.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 24 | 24 | – | – | |
| ProSiteProfiles | 47 | 81 | 35 | 5.733 | ||
| PANTHER | 54 | 87 | 34 | 3.10E-232 | – | |
| PANTHER | 54 | 87 | 34 | 3.10E-232 | – | |
| Pfam | 108 | 157 | 50 | 3.30E-11 | ||
| ProSiteProfiles | 109 | 143 | 35 | 9.799 | ||
| TIGRFAM | 112 | 144 | 33 | 1.20E-04 | ||
| PANTHER | 114 | 282 | 169 | 3.10E-232 | – | |
| Gene3D | 114 | 197 | 84 | 5.40E-07 | ||
| PANTHER | 114 | 282 | 169 | 3.10E-232 | – | |
| ProSiteProfiles | 144 | 178 | 35 | 12.704 | ||
| TIGRFAM | 146 | 180 | 35 | 4.10E-09 | ||
| ProSiteProfiles | 179 | 213 | 35 | 5.908 | ||
| ProSiteProfiles | 214 | 248 | 35 | 10.128 | ||
| TIGRFAM | 216 | 250 | 35 | 4.50E-06 | ||
| Pfam | 245 | 276 | 32 | 8.20E-08 | ||
| ProSiteProfiles | 249 | 283 | 35 | 10.994 | ||
| TIGRFAM | 251 | 284 | 34 | 5.10E-06 | ||
| Gene3D | 252 | 397 | 146 | 5.40E-07 | ||
| ProSiteProfiles | 284 | 318 | 35 | 8.035 | ||
| TIGRFAM | 290 | 319 | 30 | 0.0013 | ||
| Pfam | 315 | 347 | 33 | 5.50E-08 | ||
| PANTHER | 318 | 453 | 136 | 3.10E-232 | – | |
| PANTHER | 318 | 453 | 136 | 3.10E-232 | – | |
| ProSiteProfiles | 319 | 353 | 35 | 11.268 | ||
| TIGRFAM | 321 | 354 | 34 | 2.10E-07 | ||
| ProSiteProfiles | 354 | 388 | 35 | 12.288 | ||
| Pfam | 355 | 401 | 47 | 5.40E-13 | ||
| TIGRFAM | 358 | 390 | 33 | 7.10E-09 | ||
| ProSiteProfiles | 389 | 423 | 35 | 12.277 | ||
| TIGRFAM | 391 | 424 | 34 | 3.70E-05 | ||
| ProSiteProfiles | 424 | 458 | 35 | 8.802 | ||
| TIGRFAM | 427 | 459 | 33 | 0.0021 | ||
| Pfam | 430 | 456 | 27 | 0.12 | ||
| ProSiteProfiles | 459 | 493 | 35 | 10.424 | ||
| Pfam | 459 | 506 | 48 | 1.60E-07 | ||
| ProSiteProfiles | 494 | 528 | 35 | 9.021 | ||
| Pfam | 528 | 556 | 29 | 0.024 | ||
| ProSiteProfiles | 529 | 559 | 31 | 5.777 | ||
| ProSiteProfiles | 560 | 594 | 35 | 9.021 | ||
| Pfam | 564 | 591 | 28 | 0.079 | ||
| PANTHER | 590 | 776 | 187 | 3.10E-232 | – | |
| PANTHER | 590 | 776 | 187 | 3.10E-232 | – | |
| ProSiteProfiles | 595 | 629 | 35 | 9.131 | ||
| TIGRFAM | 598 | 631 | 34 | 0.0021 | ||
| Pfam | 629 | 675 | 47 | 7.70E-19 | ||
| ProSiteProfiles | 630 | 664 | 35 | 14.316 | ||
| TIGRFAM | 633 | 666 | 34 | 6.50E-12 | ||
| ProSiteProfiles | 665 | 699 | 35 | 7.289 | ||
| ProSiteProfiles | 700 | 734 | 35 | 10.972 | ||
| Pfam | 700 | 748 | 49 | 1.40E-14 | ||
| TIGRFAM | 702 | 736 | 35 | 3.30E-05 | ||
| ProSiteProfiles | 735 | 769 | 35 | 12.145 | ||
| TIGRFAM | 737 | 770 | 34 | 3.60E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2980340.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2980340.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.