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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3091540 |
| Transcript ID | Lj1g3v3091540.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g02330-like [Glycine max] gi|356523677|ref|XP_003530462.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 88 | 61 | 0 | – | |
| PANTHER | 28 | 88 | 61 | 0 | – | |
| ProSiteProfiles | 40 | 74 | 35 | 5.382 | ||
| ProSiteProfiles | 75 | 105 | 31 | 7.004 | ||
| Pfam | 80 | 106 | 27 | 0.22 | ||
| ProSiteProfiles | 106 | 136 | 31 | 8.199 | ||
| Pfam | 108 | 135 | 28 | 0.0024 | ||
| PANTHER | 120 | 308 | 189 | 0 | – | |
| PANTHER | 120 | 308 | 189 | 0 | – | |
| ProSiteProfiles | 139 | 173 | 35 | 9.251 | ||
| TIGRFAM | 141 | 172 | 32 | 0.003 | ||
| Pfam | 141 | 170 | 30 | 0.0021 | ||
| ProSiteProfiles | 174 | 208 | 35 | 5.579 | ||
| ProSiteProfiles | 209 | 243 | 35 | 9.876 | ||
| TIGRFAM | 215 | 242 | 28 | 0.0013 | ||
| Pfam | 240 | 287 | 48 | 1.80E-07 | ||
| TIGRFAM | 242 | 272 | 31 | 4.30E-05 | ||
| ProSiteProfiles | 244 | 274 | 31 | 6.73 | ||
| ProSiteProfiles | 310 | 340 | 31 | 5.261 | ||
| ProSiteProfiles | 341 | 375 | 35 | 8.331 | ||
| Pfam | 344 | 371 | 28 | 0.0024 | ||
| TIGRFAM | 344 | 374 | 31 | 7.60E-04 | ||
| PANTHER | 410 | 477 | 68 | 0 | – | |
| PANTHER | 410 | 477 | 68 | 0 | – | |
| ProSiteProfiles | 411 | 445 | 35 | 8.999 | ||
| Pfam | 441 | 489 | 49 | 1.40E-08 | ||
| ProSiteProfiles | 446 | 476 | 31 | 5.152 | ||
| ProSiteProfiles | 477 | 511 | 35 | 7.618 | ||
| ProSiteProfiles | 512 | 542 | 31 | 7.377 | ||
| PANTHER | 513 | 822 | 310 | 0 | – | |
| PANTHER | 513 | 822 | 310 | 0 | – | |
| Pfam | 517 | 542 | 26 | 0.018 | ||
| Gene3D | 541 | 800 | 260 | 5.60E-10 | ||
| ProSiteProfiles | 543 | 577 | 35 | 10.172 | ||
| Pfam | 543 | 590 | 48 | 1.60E-09 | ||
| ProSiteProfiles | 578 | 612 | 35 | 6.084 | ||
| ProSiteProfiles | 613 | 643 | 31 | 7.103 | ||
| SUPERFAMILY | 623 | 668 | 46 | 1.52E-06 | ||
| Pfam | 644 | 691 | 48 | 7.50E-09 | ||
| ProSiteProfiles | 644 | 678 | 35 | 11.707 | ||
| TIGRFAM | 646 | 679 | 34 | 1.50E-07 | ||
| ProSiteProfiles | 679 | 709 | 31 | 7.377 | ||
| ProSiteProfiles | 715 | 749 | 35 | 7.695 | ||
| Pfam | 718 | 742 | 25 | 0.0067 | ||
| SUPERFAMILY | 762 | 798 | 37 | 1.52E-06 | ||
| ProSiteProfiles | 781 | 815 | 35 | 7.432 | ||
| Pfam | 817 | 869 | 53 | 1.20E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3091540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3091540.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.